Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01330 ATGGCACCAACTCATTTCCAGCAACAAAATGGTTCAGTAGAGAGCTTGTGCATAAGCCAAAACGATCCACTCAATTGGGGTGTGGCTGCCGAGTCCCTCCAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTCGAAGAGTACCGGAGGCCCCTTGTGAAGCTTGGTGGTGAAACCCTTACCATTTCTCAAGTAGCTGCTATTGCTACTCGGGACTATGATGTTACCGTTGAGCTTTCTGAGTCAGCTAGAGCTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGTATGAACAAAGGGACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACGTCTCATAGAAGGACCAACCAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGAATTTTTGGAAGTGGAGCTGAGTCTGATCATACTTTGCCTCATTCGGCTACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCTATAACCAAACTTTTGAACCATAACATCACTCCGTGCTTGCCTCTTCGTGGAACAATTACTGCTTCTGGAGATCTTGTTCCTCTTTCCTATATTGCTGGATTGCTCACTGGGCGACCCAACTCCAAGGCCATTGGACCTAACAGAGAACGTATTGATGCCAAGGAAGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTCGAATTGCAACCTAAGGAAGGTCTTGCTCTTGTTAATGGTACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGTTGTTCTATCGGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCAGAATTTACTGATTATTTGACTCATAAGTTGAAGCATCACCCTGGTCAAATTGAAGCGGCTGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAACAGCCAAGAAATTGCACAAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCTACAAAATCTATTGAACGAGAGATTAACTCCGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGGTTGGCCATTGCTTCTATTGGGAAGCTCATGTTTGCCCAATTCTCAAAACTTGTTAATGATTTCTACAACGGTTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCGAGTTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCCGAGCTTCAATACCTTGCAAATCCAGTGACAAGTCATGTTCAGAGCGCCGAGCAACACAACCAAGATGTTAACTCTTTAGGTTTAATTTCTTCAAGGAAAACAGCTGAAACCATCGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAGAGCACTGTGAAGAGCACGATTAGCCAAATAGCCAAGAAAGTATTGACCACATCCTCCAATGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACAGAGAGTACACATTTACTTATATCGATGATCCATGCAGTGCTACTTACCCATTGAGTCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAATGGTGATAATGAAAAGAACACAGACACTTCAGTCTTCCAAAAGATTGCTTCTTTTGAGGAGGAACTAAAAGTAGTATTACCAAAGGAAGTTGAAAATACAAGGTTGGCCTATGAGAGCGGGAACTCTAAAATTGAAAATCAGATCAAGAATTGCAGATCGTATCCATTATACAGATTTGTGAGAGAAGAGTTGGAAACAAAAATACTAACTGGAGAAAAAGTGATATCTCCCGGAGAAGAGTGCGAGAAAGTATTTACAGCTTTATGTCAAGGCAATATGATAGACTCGATCTTAGAGTGCTTGAAGGAGTGGAATGGTGCTCCAATTCCTATTTGCTAA 2139 42.17 MAPTHFQQQNGSVESLCISQNDPLNWGVAAESLQGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDYDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNRERIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHKIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSKLVNDFYNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAETIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTISQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFTYIDDPCSATYPLSQKLRQVLVEHALANGDNEKNTDTSVFQKIASFEEELKVVLPKEVENTRLAYESGNSKIENQIKNCRSYPLYRFVREELETKILTGEKVISPGEECEKVFTALCQGNMIDSILECLKEWNGAPIPIC 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11499128 11501266 + Lsi01G013300.1 Lsi01g01330 653988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01330 712 Pfam Aromatic amino acid lyase 60 531 IPR001106 -
Lsi01g01330 712 PANTHER HISTIDINE AMMONIA-LYASE 18 712 IPR001106 -
Lsi01g01330 712 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 712 - -
Lsi01g01330 712 Gene3D - 13 259 IPR024083 -
Lsi01g01330 712 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824
Lsi01g01330 712 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 702 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi01g01330 712 Gene3D - 525 646 IPR023144 -
Lsi01g01330 712 CDD PAL-HAL 58 522 IPR001106 -
Lsi01g01330 712 Gene3D Fumarase/aspartase (Central domain) 260 707 - -
Lsi01g01330 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01330 Lsi-Chr1:11499128 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi01g01329 Lsi-Chr1:11494207 Lsi01g01330 Lsi-Chr1:11499128 0 tandem
Lsi01g01330 Lsi-Chr1:11499128 Lsi01g01331 Lsi-Chr1:11504847 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01330 K10775 - csv:101218617 1331.62