Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01331 ATGGCATCTTTTCAAAAGATTGAAGATAACTTGTGCCATAGCCATAGTGATCCACTCAATTGGGGGTTGGCTGCCGAGTCCCTTAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTGGAGGAGTACCGAAGACCCCTTGTCAAGCTTGGTGGTGAAACCCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGACTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGTATGAATAAAGGGACTGATAGTTATGGTGTTACGACTGGGTTTGGTGCTACGTCTCACAGAAGGACCAAACAAGGTGGTGCTCTCCAAAAGGAGTTGATTAGATTCTTGAATGCTGGAATGTTTGGAAGTGGAGCTGAGTCAAGTCATACTTTGCCTCACTCGGCTACGAGAGCGGCTATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCAAACTCTTGAACCAAAATATCACTCCATGTTTGCCTCTTCGTGGAACTATTACTGCTTCGGGTGATCTTGTTCCTCTTTCATACATTGCTGGATTGCTCACTGGTCGACCGAATTCTAAAGCCGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACAAGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTGGCCCTTGTCAATGGAACTGCTGTTGGTTCTGGATTAGCTTCTATTGTCCTCTTTGAGGCAAATATTTTGGTTGTTTTGTCCGAAATTTTGTCTGGCATCTTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGACCATTTGACCCATAAGTTGAAGCATCATCCTGGCCAAATTGAGGCAGCTGCAATCATGGAGCACATTTTGGACGGGAGTTCTTACATGAAAACGGCCAAGAAGTTGCATGAAATGGACCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGATTCTCAACAAAGTCTATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGAAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTTTGGCTATTGCTTCAATTGGAAAACTCCTTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAACAATGGATTACCCTCAAATCTCTCTGCAAGTAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAACTTCAATACCTAGCAAATCCTGTAACTAGCCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTTGGTTTGATCTCCTCAAGAAAAACAGCTGAAGCCATTGACATTTTGAAGCTCATGTCTTCTACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGAGCACAGTTAAAAATACAGTGAGCCAAGTGGCGAAGAAAGTCCTCACCACTAGCTCAAATGGTTCACTTCATCCTTCAAGATTCTGCGAGAAAGATTTGCTGAAAGTAGTTGATAGAGAATACACTTTCGCTTACATTGACGATCCCTGTAGTGCTACTTATCCATTGATGCAAAAGTTGAGACAAGTTATTGTCGAGCATGCTTTGAATAATGGAGAGGACGAAAAAGACCTCTCCACTTCGATCTTTCAAAAAATTGGAGCATTTGAAGAGGAATTGAAAGCCATTTTGCCCAAAGAAGTGGAAAGTGTGAGATTGGCATATGAAAATGGAGATGCAACCATTGAGAACCAGATTAAGGAATGCAGATCTTACCCATTATATAAGTTTGTGAGGGAAGAGTTGGGCACTAAATTGCTAACCGGGGAGAGGGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTCACTGCATTGTGCCAAGGAAAGATGATTGACTCAATTTTAGAATGCTTGAAGGAATGGAATGGCGCTCCAATTCCCATATGCTGA 2127 43.07 MASFQKIEDNLCHSHSDPLNWGLAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGMFGSGAESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEILSGIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGSLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGAFEEELKAILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTKLLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11504847 11506973 - Lsi01G013310.1 Lsi01g01331 653989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01331 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841
Lsi01g01331 708 Gene3D - 521 642 IPR023144 -
Lsi01g01331 708 Gene3D - 8 254 IPR024083 -
Lsi01g01331 708 CDD PAL-HAL 53 518 IPR001106 -
Lsi01g01331 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Lsi01g01331 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824
Lsi01g01331 708 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi01g01331 708 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 14 708 - -
Lsi01g01331 708 Pfam Aromatic amino acid lyase 55 530 IPR001106 -
Lsi01g01331 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01326 Lsi-Chr1:11485299 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi01g01328 Lsi-Chr1:11489995 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi01g01331 Lsi-Chr1:11504847 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi06g00309 Lsi-Chr6:3525133 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi08g00715 Lsi-Chr8:15470881 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi10g01255 Lsi-Chr10:16767733 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi01g01330 Lsi-Chr1:11499128 Lsi01g01331 Lsi-Chr1:11504847 0 tandem
Lsi01g01331 Lsi-Chr1:11504847 Lsi01g01332 Lsi-Chr1:11510769 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01331 K10775 - csv:101218382 1348.95