Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01332 ATGGCACCCATTGATCAAACCAATGATACCTTTTGTACCATTACTACTCATCCTGACCCACTTAATTGGGGTTTGGCTGCTGATTCCGTCAAGGGAAGTCATCTTGATGAGGTGAAGCGCATGGTCGAGGAGTATCGGAGGCCCCTTGTCAAGCTTGGTGGTGAAACTCTTACTATTTCTCAAGTGGCTGCCATTGCTACTCGAGATTCTGATGTTATTGTTGAGCTTTCCGAGTCTGCTAGAGCTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGTATGAATAAAGGAACCGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAGTCTGATCATATTTTGCCCCATTCGGCTACGAGAGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATTACCAAGCTCTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGTGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCCAATTCTAAAGCCGTTGGTCCAAATGGTGAAAGTCTTTATGCAAAGGAGGCTTTCCAGCAGGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCTCTTGTTAATGGCACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCCGAAATTTTGTCTGCCATCTTTGCTGAAGTCATGCAAGGCAAGCCTGAATTTACTGACCATTTGACACATAAGTTGAAGCATCATCCTGGCCAAATTGAAGCAGCTGCGATCATGGAACACATTTTAGATGGGAGTTCTTACATGAAAACTGCCAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCTCTTAGAACTTCACCCCAATGGCTGGGTCCATTGATTGAAGTTATTCGCTTCTCTACAAAGTCTATTGAGCGGGAGATTAATTCGGTCAATGATAACCCTTTGATTGATGTTTCAAGAAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATCGGAGTCTCCATGGACAACACTCGTTTGGCTATTGCTTCAATTGGAAAACTCCTTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAACAACGGGTTACCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAACTTCAATATCTAGCAAACCCCGTAACAAGTCATGTCCAAAGTGCTGAACAACATAATCAAGATGTCAACTCTCTTGGTTTAATCTCATCACGGAAAACAGCTGAAGCCATTGACATTTTAAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAATATAGTGAAAAACACAGTAAGTCAAGTAGCCAAGAAAGTTCTCACCACAGGTGCTAACGGTGCACTTCACCCATCAAGATTTTGTGAAAAAGATTTACTGAAAGTGGTCGACAGAGAATACACCTTTGCCTACGTCGATGATGCATGCAGTGCCACTTACCCATTGATGCAAAAACTAAGACAAGTTCTTGTTGAACATGCTTTGGGAAATGGTGAAGATGAAAAGAACGCAAACACTTCAATTTTTCAAAAGATTGGAGCTTTCGAGGAGGAATTGAAAGCCATCTTACCGAAAGAAGTAGAAAATGCAAGATTGTCCTATGAAAATGGAACTTCCACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTATACAAGTTCGTGAGGGAGGAGTTGGGAACTGGGTTGTTGACCGGAGAGAGGGTGATATCTCCAGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGTCAAGGAAAGATGATCGATCCAATTTTAGAGTGTTTGAAGGAGTGGAATGGTGCTCCAATCCCCATCTGCTAG 2133 42.62 MAPIDQTNDTFCTITTHPDPLNWGLAADSVKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHILPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLYAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNIVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALGNGEDEKNANTSIFQKIGAFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGERVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11510769 11512901 - Lsi01G013320.1 Lsi01g01332 653990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01332 710 Gene3D - 523 644 IPR023144 -
Lsi01g01332 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841
Lsi01g01332 710 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi01g01332 710 Gene3D - 11 256 IPR024083 -
Lsi01g01332 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Lsi01g01332 710 CDD PAL-HAL 55 520 IPR001106 -
Lsi01g01332 710 Pfam Aromatic amino acid lyase 57 532 IPR001106 -
Lsi01g01332 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824
Lsi01g01332 710 PANTHER HISTIDINE AMMONIA-LYASE 14 710 IPR001106 -
Lsi01g01332 710 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 14 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01332 Lsi-Chr1:11510769 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi01g01331 Lsi-Chr1:11504847 Lsi01g01332 Lsi-Chr1:11510769 0 tandem
Lsi01g01332 Lsi-Chr1:11510769 Lsi01g01333 Lsi-Chr1:11521122 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01332 K10775 - csv:101218144 1367.44