Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01333 ATGGCTGAATCCGGTCACCGAAACGGCGGCGAGTTTTGCATCGCTGGTCGGAATAATATCAACTACGACCCGTTGAATTGGGGAGTGGCAGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGCGGATGGTGGAGGAGTACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATATCTCAGGTGGCTGCGATCGCCGCCAAGGATTCCGGCGTGGCGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGCGTGGAGGCGAGCAGTAAGTGGGTGATGGACAGCATGAATCAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAAGGAACTCATACGATTTTTGAATGCGGGAGTATTTGGAAATGGCATTGAATCGAATCACACTCTGTCTCACTCAGCAACGAGAGCAGCCATGTTGGTCAGAATCAACACTCTTCTTCAAGGATATTCGGGTATTAGATTTGAAATTTTGGAAGCCATAACCAAACTTCTCAACCACAACATCACTCCATGTTTGCCACTTCGAGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCCGGATTGCTTACTGGCCGACCAAACTCTAAAGCTATTGGTCTAAATGGAGAAAGTCTTGATGCGAAGGAGGCTTTCAAACAAGCTGGTATTCCTTCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGCTGGCTCTCGTCAATGGGACTGCTGTTGGTTCTGGATTAGCCTCTATTGTTCTCTTTGAGGCAAACATTTTGGCAGTTTTAGCTGAGATTTTGTCTGCTATTTTTGCTGAGGTTATGCAAGGTAAGCCTGAATTTACAGATCATTTGACCCACAAGTTGAAGCATCATCCTGGTCAAATTGAGGCAGCTGCAATCATGGAACATATTTTGGATGGAAGCTCTTACATGAAAGAAGCTAAGAAATTGCATGAAATTGACCCTCTTCAGAAGCCAAAACAAGATCGTTATGCTCTTAGAACTTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCGATTGAGCGAGAGATTAATTCGGTCAACGATAACCCTTTGATTGACGTTTCAAGGAACAAGGCTTTACATGGAGGTAATTTCCAGGGAACGCCAATCGGTGTCTCAATGGACAACACTCGCTTGGCTATAGCTTCGATTGGTAAGCTCCTTTTTGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTTTGCCTTCAAATCTCTCTGCAAGTAGAAATCCAAGCTTAGATTATGGACTCAAAGGTACTGAAATTGCTATGGCATCCTATTGCTCTGAGCTTCAATATCTAGCAAACCCAGTAACAAGCCATGTGCAAAGTGCTGAGCAACATAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCAAGAAAAACAGAAGAAGCCATTGATATTTTGAAACTCATGTCTTCAACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTAGAAGAAAATTTAAAGAGCACAGTGAAAAACACAGTAAGCCAAGTGGCCAAGAAGGTCCTTACCACTAATGCAAATGGAGCTCTCCACCCGTCGAGATTTTGTGAGAAGGATTTACTCAAAGTTGTTGATAGAGAATATACCTTTGCTTACATTGATGACCCATGCAGTGCCAATTATCCATTAATGCAAAAGTTAAGACAAGTTCTTGTAGAGCATGCACTTACAAATGGAGAAGATGAAAAGAACACAAATAGTTCAATCTTTCAAAAGATTGGTGTTTTTGAAGAGGAACTAAAAGCTGTTTTACCTAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTCTACCATTCAAAATCAAATTAAGGAATGTAGATCATATCCACTCTACAAGTTTGTGAGAACAGAGTTAGGAACTGAGTTGCTTACAGGAGAGAAGGTAAAATCTCCCGGAGAGGTATGCGAGAAAGTGTTCATAGCTTTATGTCAAGGTAAGATGATAGATCCAATCTTAGAGTGTTTAAAAGAGTGGAATGGTGCTCCAATCCCTATTTGTTAA 2145 43.5 MAESGHRNGGEFCIAGRNNINYDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIAAKDSGVAVELSESARGGVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGVFGNGIESNHTLSHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGLNGESLDAKEAFKQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGLKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTNANGALHPSRFCEKDLLKVVDREYTFAYIDDPCSANYPLMQKLRQVLVEHALTNGEDEKNTNSSIFQKIGVFEEELKAVLPKEVESARFAYENGNSTIQNQIKECRSYPLYKFVRTELGTELLTGEKVKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11521122 11524034 - Lsi01G013330.1 Lsi01g01333 653991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01333 714 Gene3D - 15 260 IPR024083 -
Lsi01g01333 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Lsi01g01333 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi01g01333 714 Gene3D - 527 648 IPR023144 -
Lsi01g01333 714 PANTHER HISTIDINE AMMONIA-LYASE 18 714 IPR001106 -
Lsi01g01333 714 CDD PAL-HAL 59 524 IPR001106 -
Lsi01g01333 714 Pfam Aromatic amino acid lyase 61 536 IPR001106 -
Lsi01g01333 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 714 - -
Lsi01g01333 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Lsi01g01333 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01333 Lsi-Chr1:11521122 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi01g01332 Lsi-Chr1:11510769 Lsi01g01333 Lsi-Chr1:11521122 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01333 K10775 - csv:101217907 1346.26