Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01337 ATGGAGAAATTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCCTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTCCCACAAGGCCATGCTGAGCATTCTTGTGCTCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTTTGCAGAGTTTCTGCCATCAAGTTCCTTGCAGATCCTGACACTGACGAGGTGTTTGCTAAACTTAGGTTGATTCCCATAAATGGAAATGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAGCAGGATAAGCCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTTCAGACCATTCTTGCTAAGGATGTTCATGGCGAGACGTGGAAATTCAGGCACATTTACCGAGGGACGCCTCGGCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAACCATAAGAAGCTCGTTGCAGGTGATTCCATTGTTTTCTTAAGGGCAGAAAACGGAGATCTCTGCGTTGGGATTAGACGGGCGAAAAGGGGAATCGGGGATGGACCGGAGTCGTCGTGTGGATGGAATCCAGCAGGTGGCAACTGTGCTGTTCCATATGGACCATTCTCTGCATTTTTGAGGGAAGATGAAAACAGACTAACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTCATGGGAAAAGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGACAACCCTTTGAAATAGTATTCTATCCGAGAGCTAGTACTCCTGAATTCTGTGTCAAGGCAGCACTGGTTAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGCTGGTTCATGGGTACCATCAATTCGGTTCAGGTCGCTGACCCACTGCACTGGCCTGAGTCACCATGGAGGCTTCTTCAGGTTACATGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTCGAATTGGTATCGAACATGTCTCCAATTCACCTTGCCCCCTTCTCACCACCAAGGAAAAAGTTCAGATATCCACAACACCCCGATTTCCCTCTCGATAACCAACCTCCTGTGCCATCGTTCTCTAGTTATCTCCATGGAACCGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATCTCAGTAAACTGCAGTCAGGTCTATTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGACGGCGTAAAGACTCCTCAGCTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCTCAAAGCTTCTCCGGCGATACGGTTTCTCCAGTTAATACTGGCAATAGTTCATCAGATGGAAACGGAGACAAAATGGCAAATTTCTCTGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACCAGAAGGCTCGGCGTGTGAAAATTTCCAATGGTACAAGGACAATCGCCAAGAAATCGAGCCTAACTTGGATACCGGCCACTGTAAAGTCTTTATGGAATCAGAAGACGTAGGTCGCACCCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAACCATGTCTTGTACCGGGATGTTTCCGGTGCTGTCAAGCATGTCGGTGACGAACAATTCAGGTTTGTATCTTCTTCCTTTCTGCAACAGTCGAAACATCATCATAAAATCTGTCATTTCCATTACATATTGCATTTGATTAACGCTTCATTTTTCTGTTTCAGTGACTTCATCAAGACAGCAAGAAGATTGACAATTCTAACAGATTCAGGAAGTAATAATGTAGGAGCTTAG 2178 45.04 MEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGNELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVPYGPFSAFLREDENRLTRSANGMNGNGSLMGKGKVKPESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVADPLHWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKFRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFSIGYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVNTGNSSSDGNGDKMANFSDGSGSALHQQGLPEGSACENFQWYKDNRQEIEPNLDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFRFVSSSFLQQSKHHHKICHFHYILHLINASFFCFSDFIKTARRLTILTDSGSNNVGA 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11579871 11582601 - Lsi01G013370.1 Lsi01g01337 653995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01337 725 MobiDBLite consensus disorder prediction 543 579 - -
Lsi01g01337 725 Gene3D - 317 391 - -
Lsi01g01337 725 ProSiteProfiles PB1 domain profile. 605 683 IPR000270 GO:0005515
Lsi01g01337 725 CDD B3_DNA 112 213 IPR003340 GO:0003677
Lsi01g01337 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi01g01337 725 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Lsi01g01337 725 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi01g01337 725 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Lsi01g01337 725 MobiDBLite consensus disorder prediction 543 578 - -
Lsi01g01337 725 SUPERFAMILY DNA-binding pseudobarrel domain 107 219 IPR015300 -
Lsi01g01337 725 Gene3D - 603 682 - -
Lsi01g01337 725 Gene3D - 111 215 IPR015300 -
Lsi01g01337 725 SMART B3_2 113 215 IPR003340 GO:0003677
Lsi01g01337 725 PANTHER AUXIN RESPONSE FACTOR 2 673 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01337 Lsi-Chr1:11579871 Lsi01g00116 Lsi-Chr1:1225345 1.28E-75 dispersed
Lsi08g00944 Lsi-Chr8:17909532 Lsi01g01337 Lsi-Chr1:11579871 1.11E-07 transposed
Lsi01g01337 Lsi-Chr1:11579871 Lsi10g01262 Lsi-Chr10:16880026 0 wgd
Lsi01g01337 Lsi-Chr1:11579871 Lsi08g00720 Lsi-Chr8:15567962 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24675 PF02362 B3 1.60E-21 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01337 - - csv:101217039 1371.68