Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01343 ATGATCGAGAGGGGGAACCAAAAGCACATGGAAGTATACTTATTCCAAGACGAAGAACTCGAAAATGGGGAAGCAGAGAGGATCAAGAGAGGGAGAAGGAAAGGGATGGGAATGTTTTGTAATTCAGATGAGGATTATGATGTGGTGAAAGGAAGGGTATTAGATCCAAATCTGCCCATATTGAACAAATGGAACAGGGTTTTTCTGGTGGCTTGTCTAGTGTCATTATTTGTGGACCCTGTTTTCTTTTTCTTGCCGGTGGTGAAGGCGGAGGACGGGTGCGTGGAAATGAGCGGAGCGTTGGGGGTGGCGTTGACGGTGGTCCGGTCCATGGCGGATGTGTTCTACATAACACACATACTAGTTAGCTCTTTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAATTTTGCCATTGTGATTGCAATTGTTGGGTTGGTGCTGTTCGCTCTTCTTATTGGAAATATGCAAACTTATCTCCAATCAACAACATTAAGACTAGAAGAATGGAGGGTAAGAAGAAGAGACACAGAGCAATGGATGCAACACAGACAATTACCAAACCAATTAAAACAGAGCGTAAGAAATTACGAACAATTCCGATGGATGGCAACTCACGGCGTCGACGAACAACACATTCTCAAATCCCTTCCATTAGATCTCCGACGACAAATCAAACGCCATCTCTGCCTCGATCTCCTCCGTCAAGTTCCTCTGTTCGACGAAATGGAAGAAAGAATGTTGGATGCAATTTGCGAGCGATTAAGACCCTGTTTGAGCACTTCCAACACTTGTTTACTTCGAGAAGGCGACCCAGTTAATGAAATGTTGTTCATAATCCGTGGCCATTTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTTTTCAACTCGAGCCGTCTTGGGCCGAGTGATTTCTGCGGCGAGGAGTTGCTTCCTTGGGCGTTGGATGACCCTAGGGCGGCGGCGGTGTTGCCGTCGTCGACGAGGACGGTGACGGCGGTGACGGAAGTGGAAGGGTTCGCGCTTGTGGCGGAGGATTTGAAATTTGTGGCGGCGCAGTTTCGGAAGCTGCATAGTAAGCAGATTAGGAGTACTTTTAGGTTTCACTCGCAGCAATGGCGGACGTGGGCGGCGTGTTTTATACAGGCGGCGTGGGTTAGTTATAAGCGGCGGCAGAAGAAGGAGGAGGAGATTAATGTTGTGAGGAAGATGAATGTTGTTCATCATAGGTCGTTGGTGAAGCCGCTTCAACTTGATTTCTCAATGGAACACAGATGA 1293 47.64 MIERGNQKHMEVYLFQDEELENGEAERIKRGRRKGMGMFCNSDEDYDVVKGRVLDPNLPILNKWNRVFLVACLVSLFVDPVFFFLPVVKAEDGCVEMSGALGVALTVVRSMADVFYITHILVSSLGQNLLTSSNVGEINFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRRDTEQWMQHRQLPNQLKQSVRNYEQFRWMATHGVDEQHILKSLPLDLRRQIKRHLCLDLLRQVPLFDEMEERMLDAICERLRPCLSTSNTCLLREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALDDPRAAAVLPSSTRTVTAVTEVEGFALVAEDLKFVAAQFRKLHSKQIRSTFRFHSQQWRTWAACFIQAAWVSYKRRQKKEEEINVVRKMNVVHHRSLVKPLQLDFSMEHR 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11630738 11636261 - Lsi01G013430.1 Lsi01g01343 654001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01343 430 SMART cnmp_10 242 374 IPR000595 -
Lsi01g01343 430 Gene3D Helix hairpin bin 170 233 - -
Lsi01g01343 430 PANTHER PROTEIN CNGC15A 122 410 - -
Lsi01g01343 430 Gene3D Jelly Rolls 240 361 IPR014710 -
Lsi01g01343 430 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 122 410 - -
Lsi01g01343 430 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 122 - -
Lsi01g01343 430 PANTHER PROTEIN CNGC15A 27 122 - -
Lsi01g01343 430 SUPERFAMILY cAMP-binding domain-like 172 364 IPR018490 -
Lsi01g01343 430 CDD CAP_ED 242 362 IPR000595 -
Lsi01g01343 430 ProSiteProfiles cAMP/cGMP binding motif profile. 242 328 IPR000595 -
Lsi01g01343 430 SUPERFAMILY Voltage-gated potassium channels 66 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01343 Lsi-Chr1:11630738 Lsi10g01258 Lsi-Chr10:16827240 4.58E-22 dispersed
Lsi01g01343 Lsi-Chr1:11630738 Lsi09g00029 Lsi-Chr9:279115 1.65E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01343 K05391 - csv:101221856 563.148