Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01346 | ATGGGAGCAATGTCTAACAATGTTGATGGAAGAAGAAAGGTCAAGGACTACGAAGATCCACCTCCCGCCCTGTTCATCGACGCCGGCGAGCTCATTCAGTGGTCCTTTTACAGAGCCATTATCGCCGAGTTCGTCGCCACCCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATTCCAGCCTCTCCGCCGCCAATACCTGCGGTGGTATCGGCGCTTTGGGCATTTCCTGGGCTGTCGGCGGCATGATCTTCGTTCTCGTTTACTGCACCGCTGGAATTTCTGATCTGTCAAATTACGCTGTGTTGTTCATCTCTGTAGGTGGGCATATTAATCCAGCGGTGACGTTTGGGATGTTCTTAGCTCGAAAAATCTCTCTAATCAGAGCTTTTTTTTACATTGTGGCTCAATGTTTGGGCGCCGTTTGTGGGTGTGCCTTGGCTAAATCATTACAGAAGACTTATTACGTTCAGTACCAAGGTGCAGCTAATATGGTCGCCGATGGGTACAGCATCGGCACCGGCTTAGCCGCAGAGATCATTGGAACTTTTGTTCTTGTTTACACAGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCTCACATCCCTGTTTTGGCGCCACTCCCAATTGGATTCGCAGTGATTATAGTTCATTTAGCCACCATTCCAATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGAGCTGCAATGATCTATAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGATTGGGCCATTCATTGGAGCTGCCATTGCTGCAGTTTATCATGTAGTTATAATAAGGGCAGGGACAATTAAAGCTCTGGTTTCCTTCAGAAGTTCCTCTGCTCTATAA | 885 | 48.14 | MGAMSNNVDGRRKVKDYEDPPPALFIDAGELIQWSFYRAIIAEFVATLLFLYILVLTVIGNSSLSAANTCGGIGALGISWAVGGMIFVLVYCTAGISDLSNYAVLFISVGGHINPAVTFGMFLARKISLIRAFFYIVAQCLGAVCGCALAKSLQKTYYVQYQGAANMVADGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVIIVHLATIPITGTGINPARSFGAAMIYNKAKAWDHHWIFWIGPFIGAAIAAVYHVVIIRAGTIKALVSFRSSSAL | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11656610 | 11658914 | - | Lsi01G013460.1 | Lsi01g01346 | 654004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01346 | 294 | PRINTS | Major intrinsic protein family signature | 256 | 276 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g01346 | 294 | PRINTS | Major intrinsic protein family signature | 180 | 198 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g01346 | 294 | PRINTS | Major intrinsic protein family signature | 216 | 238 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g01346 | 294 | PRINTS | Major intrinsic protein family signature | 94 | 118 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g01346 | 294 | PRINTS | Major intrinsic protein family signature | 131 | 150 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g01346 | 294 | PRINTS | Major intrinsic protein family signature | 38 | 57 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g01346 | 294 | SUPERFAMILY | Aquaporin-like | 30 | 278 | IPR023271 | - | |
Lsi01g01346 | 294 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 4 | 291 | IPR034294 | - | |
Lsi01g01346 | 294 | Gene3D | Glycerol uptake facilitator protein. | 24 | 294 | IPR023271 | - | |
Lsi01g01346 | 294 | CDD | MIP | 38 | 276 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g01346 | 294 | ProSitePatterns | MIP family signature. | 112 | 120 | IPR022357 | - | |
Lsi01g01346 | 294 | TIGRFAM | MIP: MIP family channel proteins | 42 | 272 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g01346 | 294 | PANTHER | AQUAPORIN PIP2-1 | 4 | 291 | - | - | |
Lsi01g01346 | 294 | Pfam | Major intrinsic protein | 31 | 273 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01346 | Lsi-Chr1:11656610 | Lsi01g01349 | Lsi-Chr1:11680370 | 8.19E-150 | dispersed | |
Lsi01g01346 | Lsi-Chr1:11656610 | Lsi01g01347 | Lsi-Chr1:11661799 | 2.48E-154 | tandem | |
Lsi01g01346 | Lsi-Chr1:11656610 | Lsi10g01268 | Lsi-Chr10:16972498 | 5.08E-147 | wgd | |
Lsi01g01346 | Lsi-Chr1:11656610 | Lsi03g02029 | Lsi-Chr3:31669324 | 3.15E-113 | wgd | |
Lsi01g01346 | Lsi-Chr1:11656610 | Lsi08g00726 | Lsi-Chr8:15605389 | 4.12E-138 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01346 | K09872 | - | csv:101215604 | 485.337 |