Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01346 ATGGGAGCAATGTCTAACAATGTTGATGGAAGAAGAAAGGTCAAGGACTACGAAGATCCACCTCCCGCCCTGTTCATCGACGCCGGCGAGCTCATTCAGTGGTCCTTTTACAGAGCCATTATCGCCGAGTTCGTCGCCACCCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATTCCAGCCTCTCCGCCGCCAATACCTGCGGTGGTATCGGCGCTTTGGGCATTTCCTGGGCTGTCGGCGGCATGATCTTCGTTCTCGTTTACTGCACCGCTGGAATTTCTGATCTGTCAAATTACGCTGTGTTGTTCATCTCTGTAGGTGGGCATATTAATCCAGCGGTGACGTTTGGGATGTTCTTAGCTCGAAAAATCTCTCTAATCAGAGCTTTTTTTTACATTGTGGCTCAATGTTTGGGCGCCGTTTGTGGGTGTGCCTTGGCTAAATCATTACAGAAGACTTATTACGTTCAGTACCAAGGTGCAGCTAATATGGTCGCCGATGGGTACAGCATCGGCACCGGCTTAGCCGCAGAGATCATTGGAACTTTTGTTCTTGTTTACACAGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCTCACATCCCTGTTTTGGCGCCACTCCCAATTGGATTCGCAGTGATTATAGTTCATTTAGCCACCATTCCAATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGAGCTGCAATGATCTATAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGATTGGGCCATTCATTGGAGCTGCCATTGCTGCAGTTTATCATGTAGTTATAATAAGGGCAGGGACAATTAAAGCTCTGGTTTCCTTCAGAAGTTCCTCTGCTCTATAA 885 48.14 MGAMSNNVDGRRKVKDYEDPPPALFIDAGELIQWSFYRAIIAEFVATLLFLYILVLTVIGNSSLSAANTCGGIGALGISWAVGGMIFVLVYCTAGISDLSNYAVLFISVGGHINPAVTFGMFLARKISLIRAFFYIVAQCLGAVCGCALAKSLQKTYYVQYQGAANMVADGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVIIVHLATIPITGTGINPARSFGAAMIYNKAKAWDHHWIFWIGPFIGAAIAAVYHVVIIRAGTIKALVSFRSSSAL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11656610 11658914 - Lsi01G013460.1 Lsi01g01346 654004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01346 294 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01346 294 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01346 294 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01346 294 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01346 294 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01346 294 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01346 294 SUPERFAMILY Aquaporin-like 30 278 IPR023271 -
Lsi01g01346 294 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 291 IPR034294 -
Lsi01g01346 294 Gene3D Glycerol uptake facilitator protein. 24 294 IPR023271 -
Lsi01g01346 294 CDD MIP 38 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01346 294 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Lsi01g01346 294 TIGRFAM MIP: MIP family channel proteins 42 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01346 294 PANTHER AQUAPORIN PIP2-1 4 291 - -
Lsi01g01346 294 Pfam Major intrinsic protein 31 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01346 Lsi-Chr1:11656610 Lsi01g01349 Lsi-Chr1:11680370 8.19E-150 dispersed
Lsi01g01346 Lsi-Chr1:11656610 Lsi01g01347 Lsi-Chr1:11661799 2.48E-154 tandem
Lsi01g01346 Lsi-Chr1:11656610 Lsi10g01268 Lsi-Chr10:16972498 5.08E-147 wgd
Lsi01g01346 Lsi-Chr1:11656610 Lsi03g02029 Lsi-Chr3:31669324 3.15E-113 wgd
Lsi01g01346 Lsi-Chr1:11656610 Lsi08g00726 Lsi-Chr8:15605389 4.12E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01346 K09872 - csv:101215604 485.337