Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01347 ATGTCTAAGGATCTCGAAGCCGGTGGATTCGCCGCCAAGGACTACCAAGACCCACCTCCAGCTCCATTGATCGACGCCGAAGAGTTCACTCAATGGTCATTTTACAGAGCCATCATCGCCGAGTTCGTTGCCACGCTTCTGTTCTTGTACGTCACTGTTCTCACTGTTATTGGCTACAGTAGCCAATCCGACATAAAAAACGGCGGCCAAATCTGCGGCGGCGTCGGTATTCTCGGCATCGCTTGGGCATTCGGCGGCATGATCTTCGTTCTCGTTTACTGCACTGCTGGCATTTCTGGAGGACATATTAATCCAGCAGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTTTCTTTAGTTAGAGCAATTCTTTACATGGTGGCTCAATGTTTGGGCGCCATTTGTGGATGTGCGTTGGTGAAATCGTTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCTCTCGCCGATGGGTACAGCACCGGCACCGGCTTAGCTGCAGAGATAATCGGAACATTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCCAAGAGAAATGCTAGAGATTCTCACGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTCGCTGTGTTTATGGTTCATTTGGCCACCATTCCAATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCTTGGGATGACCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTTAGAAGTTCCACTGCCGTATGA 855 50.53 MSKDLEAGGFAAKDYQDPPPAPLIDAEEFTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11661799 11664883 - Lsi01G013470.1 Lsi01g01347 654005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01347 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Lsi01g01347 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Lsi01g01347 284 TIGRFAM MIP: MIP family channel proteins 40 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01347 284 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 2 281 - -
Lsi01g01347 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lsi01g01347 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 281 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01347 Lsi-Chr1:11661799 Lsi01g01349 Lsi-Chr1:11680370 0 dispersed
Lsi01g01351 Lsi-Chr1:11691305 Lsi01g01347 Lsi-Chr1:11661799 6.90E-111 dispersed
Lsi03g02029 Lsi-Chr3:31669324 Lsi01g01347 Lsi-Chr1:11661799 2.04E-131 dispersed
Lsi04g00069 Lsi-Chr4:849854 Lsi01g01347 Lsi-Chr1:11661799 4.70E-113 dispersed
Lsi01g01346 Lsi-Chr1:11656610 Lsi01g01347 Lsi-Chr1:11661799 2.48E-154 tandem
Lsi01g01347 Lsi-Chr1:11661799 Lsi01g01348 Lsi-Chr1:11669947 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01347 K09872 - csv:101215366 544.273