Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01348 ATGAAAACCTACCAGAAACGAAACGAAACGAAACAGAGCCATCCCCTGCCTGTGAGTGACAGTGAGGTCACGAAAAGCAACAAAAAAAAGGCCACAAAATGGGGCGGCACAAAATCACCATTAAAACTTTTCATTATCATGAAATTTCCAGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGAAAAGACTACGAAGACCCGCCGCCGGCCCCATTGATCGACGCCCAGGAGTTTGCTCAGTGGTCATTTTACAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTCACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGCGGCGTCGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGGGGACATATAAATCCGGCTGTGACTTTTGGGCTATTTTTGGCTCGAAAGGTTTCATTGGTGAGAGCCATTTTGTACATGGCGGCTCAGAGTTTGGGCGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTACACCAAGTACGGCGGTGGAGCCAACTCGCTCGCCGATGGCTACAGCACCGGCACCGGATTAGCCGCCGAAATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACCGATCCCAAGAGAAATGCCAGAGACTCTCACGTCCCAGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCATGGTTCACTTGGCCACGATTCCGATCACCGGCACCGGCATCAACCCAGCTAGAAGCTTTGGAGCTGCTGTAGTGTTCAACAAATCCAAGCCATGGGATGATCAATGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCCATAGCTGCAATTTATCACCAATTCATATTAAGAGCAGGAGCAGCCAAAGCTCTAGGATCATTCTCAAGTTCTTGA 996 48.59 MKTYQKRNETKQSHPLPVSDSEVTKSNKKKATKWGGTKSPLKLFIIMKFPDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMAAQSLGAICGCALVKAFQNAHYTKYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFILRAGAAKALGSFSSS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11669947 11674331 - Lsi01G013480.1 Lsi01g01348 654006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01348 331 Gene3D Glycerol uptake facilitator protein. 71 331 IPR023271 -
Lsi01g01348 331 SUPERFAMILY Aquaporin-like 78 318 IPR023271 -
Lsi01g01348 331 MobiDBLite consensus disorder prediction 1 35 - -
Lsi01g01348 331 Pfam Major intrinsic protein 79 313 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 PANTHER AQUAPORIN PIP2-1-RELATED 56 330 - -
Lsi01g01348 331 PRINTS Major intrinsic protein family signature 296 316 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 PRINTS Major intrinsic protein family signature 134 158 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 PRINTS Major intrinsic protein family signature 171 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 PRINTS Major intrinsic protein family signature 86 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 PRINTS Major intrinsic protein family signature 256 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 PRINTS Major intrinsic protein family signature 220 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 56 330 IPR034294 -
Lsi01g01348 331 TIGRFAM MIP: MIP family channel proteins 90 312 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 CDD MIP 86 316 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01348 331 ProSitePatterns MIP family signature. 152 160 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01348 Lsi-Chr1:11669947 Lsi10g01268 Lsi-Chr10:16972498 5.12E-169 dispersed
Lsi01g01347 Lsi-Chr1:11661799 Lsi01g01348 Lsi-Chr1:11669947 0 tandem
Lsi01g01348 Lsi-Chr1:11669947 Lsi01g01349 Lsi-Chr1:11680370 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01348 K09872 - csv:101216085 538.495