Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01349 ATGGCCAAGGATTCTGATGCTGGAGGCTTCGCCGCCAAGGACTACCACGACCCTCCACCGGCTCCTTTCATCGACGCCAACGAGTTCACTCAGTGGTCATTTTACAGAGCCATCATCGCTGAGTTCATAGCCACTCTCCTCTTCTTGTACGTCACTGTTCTCACCGTCATTGGCTACAGTAGCCAGTCCGACATAAAAAACGGCGGCCATATCTGCGGTGGTGTTGGCATTCTCGGCATCGCTTGGGCCTTCGGTGGAATGATCTTCGTTCTCGTCTACTGTACCGCTGGAATTTCCGGTGGGCATATCAATCCGGCGGTGACATTCGGGTTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGAGCTGTTTTGTACATGGTCGCTCAATGTCTTGGTGCCATTTGTGGATGTGCTTTGGTTAAATCGTTTCAAAAGGGTCTTTACAATCGCTACGGCGGTGGAGCCAATTCTCTCGCCGACGGCTACAGCACCGGCACCGGCTTAGGCGCTGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCTGCTACAGATCCCAAGAGAAGTGCTAGAGATTCTCACGTTCCTGTTCTAGCTCCACTGCCAATTGGGTTTGCCGTGTTCATGGTTCATCTAGCTACCATTCCAGTCACCGGCACCGGTATTAACCCGGCTCGAAGCTTTGGTGCTGCAGTTGTATTCAACCAGAGCAAGCCATGGAATGACCATTGGATTTTCTGGGTTGGACCCTTCATTGGAGCTGCAATTGCTGCATTTTATCACCAATTCATTTTAAGAGCTGGAGCTGTTAAAGCTTTGGGATCTTTCAGGAGTACCCACAGTGTTTGA 855 50.53 MAKDSDAGGFAAKDYHDPPPAPFIDANEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDIKNGGHICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVFNQSKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11680370 11682339 + Lsi01G013490.1 Lsi01g01349 654007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01349 284 PANTHER AQUAPORIN PIP2-4-RELATED 7 281 - -
Lsi01g01349 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Lsi01g01349 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Lsi01g01349 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 TIGRFAM MIP: MIP family channel proteins 40 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01349 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lsi01g01349 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 281 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01346 Lsi-Chr1:11656610 Lsi01g01349 Lsi-Chr1:11680370 8.19E-150 dispersed
Lsi01g01347 Lsi-Chr1:11661799 Lsi01g01349 Lsi-Chr1:11680370 0 dispersed
Lsi01g01349 Lsi-Chr1:11680370 Lsi10g01268 Lsi-Chr10:16972498 1.70E-167 dispersed
Lsi04g00068 Lsi-Chr4:840507 Lsi01g01349 Lsi-Chr1:11680370 1.01E-16 dispersed
Lsi01g01349 Lsi-Chr1:11680370 Lsi01g01351 Lsi-Chr1:11691305 4.39E-109 proximal
Lsi01g01348 Lsi-Chr1:11669947 Lsi01g01349 Lsi-Chr1:11680370 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01349 K09872 - csv:101214884 547.354