Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01351 ATGTCCAAAGATGTTGAACCCGGGTTTTCCACCGGCGACTACCTCGACCAGCCTCCGGCTCCGTTCTTCGACGCCGACGAGCTTTTGCGGTGGTCCTTTTACAGGGCCGTTATTGCTGAGTTCATTGCTACGCTTTTGTTTCTGTACGTTGGAGTTCTCACTGTGATTGGAAACCAGAGTCAGTCTTCTGCCGCCATATGCGGCGGCGTTGGCGTTCAGGGTATTGCTTGGGCTTTCGGCGGCACCATCTTCGTTCTCGTTTACTGCACCGCCGGCATTTCTGGCAAGTTCTGCTGCCCTCTTCCCCTGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTCAGAGCTTTATTTGTCTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCATTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACTGAGCTCGCCGATGGCTTCAGCCCTGGTGCTGGCCTCGCTGCTGAGATCATTGGAACCTTCGTTCTTGTTCTAGCGCCGCTCCCAATTGGGTTCGCGGTGTTCGTGGTGAATTTAGCCACCATTCCGGTCACCGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCATAAATCTTGGAATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAAACCTTGAAATCCTTCAGATCTTCCTCAATT 783 51.47 MSKDVEPGFSTGDYLDQPPAPFFDADELLRWSFYRAVIAEFIATLLFLYVGVLTVIGNQSQSSAAICGGVGVQGIAWAFGGTIFVLVYCTAGISGKFCCPLPLRTYKPSSDIWAVFGSEGFIGQSFICLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKSWNNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRSSSI 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11691305 11694300 + Lsi01G013510.1 Lsi01g01351 654009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01351 261 Gene3D Glycerol uptake facilitator protein. 20 101 IPR023271 -
Lsi01g01351 261 Gene3D Glycerol uptake facilitator protein. 121 261 IPR023271 -
Lsi01g01351 261 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 177 IPR034294 -
Lsi01g01351 261 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 175 259 IPR034294 -
Lsi01g01351 261 Pfam Major intrinsic protein 178 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01351 261 PANTHER AQUAPORIN PIP2-1 6 177 - -
Lsi01g01351 261 PANTHER AQUAPORIN PIP2-1 175 259 - -
Lsi01g01351 261 SUPERFAMILY Aquaporin-like 33 245 IPR023271 -
Lsi01g01351 261 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01351 261 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01351 261 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01351 261 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01351 261 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01351 Lsi-Chr1:11691305 Lsi01g01347 Lsi-Chr1:11661799 6.90E-111 dispersed
Lsi01g01349 Lsi-Chr1:11680370 Lsi01g01351 Lsi-Chr1:11691305 4.39E-109 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01351 K09872 - csv:101215842 414.075