Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01353 ATGAAGTTTTGTGGTATTTTTTCTACTTGTTGTTACTCTCCATCGCCGACAGCCATGGAAAACAGCCGCCACGATAGACAAGACAATGAGAGTTTTCGTGTGTACTCTTATAACGAGCTTAAATCAGCCACCAATGGATTTAGTGGATCAAATAAGGTGGGAGAGGGTGGATTCGGCATTGTTTACAAGGGTCGGCTTCGGGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATAGCTGAGTTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTGTTATGTTGATGGAAGTAACAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCACATGCTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGTTGGCTAGCCAGAAAGGAAATTTTGATTGGAGTGGCTCGTGGGCTTGCTTATCTTCATGAGGAGGTTGAGCCTCATATAGTTCATAGAGATATAAAATCCAGCAATATACTACTCGACCATAGTTTTACACCTAAAGTTGCAGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACCATTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCAGAATACGCTGTGAGCGGGCATTTGACGCGAAAATCGGATGTCTATAGCTTCGGAGTGTTGTTGTTGGAGATTGTTAGTGGAAGAGCCACTGTTGATTTTGATTTGGAACATGGTGAACACCATTTGGTTCAAAAGGTATGGGAACATTACAAGGAAAATGAGCTAGTAAAATTGATAGATCCCGTGCTTGACATAGACTTTCGCAAAGAGGAGGTTGTTCGATTTATGAAGATTGGTCTACTCTGCGTGCAAGAAAACACAACGAAACGACCACGAATGTCTCTCGCTTTAAGCATGTTGATGAAGGAGACCGACGTTAATGATCAAAATATTTCACAACCTGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCGTCAACTAGCATTTTCTCCAAGGTTTCCACAGCAAATAGCCTGTAA 1095 41.19 MKFCGIFSTCCYSPSPTAMENSRHDRQDNESFRVYSYNELKSATNGFSGSNKVGEGGFGIVYKGRLRDGRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGCYVDGSNRYLVYDYMENNSLAHALQGVRENRMRLSWLARKEILIGVARGLAYLHEEVEPHIVHRDIKSSNILLDHSFTPKVADFGLAKLLRENHSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQKVWEHYKENELVKLIDPVLDIDFRKEEVVRFMKIGLLCVQENTTKRPRMSLALSMLMKETDVNDQNISQPGHIIDFMDIKMGKGNSSTSIFSKVSTANSL 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11713102 11714695 - Lsi01G013530.1 Lsi01g01353 654011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01353 364 PANTHER RECEPTOR-LIKE KINASE 19 345 - -
Lsi01g01353 364 Pfam Protein kinase domain 50 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01353 364 Gene3D Phosphorylase Kinase; domain 1 17 124 - -
Lsi01g01353 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lsi01g01353 364 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lsi01g01353 364 ProSiteProfiles Protein kinase domain profile. 47 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01353 364 Gene3D Transferase(Phosphotransferase) domain 1 125 336 - -
Lsi01g01353 364 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01353 364 SUPERFAMILY Protein kinase-like (PK-like) 30 328 IPR011009 -
Lsi01g01353 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 345 - -
Lsi01g01353 364 CDD STKc_IRAK 53 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01353 Lsi-Chr1:11713102 Lsi07g00871 Lsi-Chr7:9878677 5.64E-112 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83286 PF00069 Pkinase 2.40E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01353 - - csv:101214642 661.759