Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01357 ATGTCTGAATTTGCTGATCATCAACAGCAAAGTTCTCAACTTTATCATCTTCCTCATCATAGCCCTAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTCTTCTTCCTCCTACTACTCTTCCCAAGAAGAAGAGAAATTTGCCAGGAAAACCAGATCCAGATGCAGAGGTAATAGCTTTATCTCCCAACACTCTAATGGCAACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGATCAAAACCTGCAACTTCACAGAAGAGGACACAATTTGCCATGGAAGCTAAGGCAAAGAAGTAACAAAGAAGTAGTGAAGAAGAAAGTGTATATTTGCCCAGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCACTTGGGGACCTAACTGGAATTAAAAAACATTTTAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTCTGTGATGCATTAGCTGAAGAAAGTGCAAAGTTAATCTCATCAGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATAATAATAATAATAATAATAATAATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTGAATCATCAAATACTTTCCCCCAATTTCCACCCTCTAATCTCTACCAAATCTCAAACCAAATTTTGAGTTTGAACAACAAAAACAATGCTTCAAAATCAGCCATCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAACAACAACAACAAGAAGGTTATAACTTGCCATCATTTTGCTCGGCCATGGGCGGTGGCGGTGGCGGAGGGATGTCGGCGACGGCGTTGCTGCTGAAAGCGGCGCAATTGGGATCGACAAAGAGTAATAATAACTCATTTTCAGGGAGTAATAGCGTGGGAGTAGTTATGAGTTCATCTTCAAATGATATTTCATTTGAGAGTGGTAATTATTATGGAGGAAAAGGAAATGGGTTGAGGGATTTTTTTGGGAGGAAGGAGGGAGAAAGGAATGATGAGATGATTATTCCATTAATGGAGATGACCAAATTTGCTAATTCTATGAGCTCTGACATGGGTTTGAGCCAATTCATTGGCAATAATAATTCGGTATAA 1266 38.23 MSEFADHQQQSSQLYHLPHHSPNPNPNPNPNLDSSLLPPTTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNNNNNNNNNSINQSLFNSQLQDHNFESSNTFPQFPPSNLYQISNQILSLNNKNNASKSAIMNLTLSSSANKQQQQQEGYNLPSFCSAMGGGGGGGMSATALLLKAAQLGSTKSNNNSFSGSNSVGVVMSSSSNDISFESGNYYGGKGNGLRDFFGRKEGERNDEMIIPLMEMTKFANSMSSDMGLSQFIGNNNSV 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11741008 11745150 - Lsi01G013570.1 Lsi01g01357 654015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01357 421 SUPERFAMILY beta-beta-alpha zinc fingers 72 170 IPR036236 -
Lsi01g01357 421 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Lsi01g01357 421 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 30 354 - -
Lsi01g01357 421 MobiDBLite consensus disorder prediction 1 20 - -
Lsi01g01357 421 MobiDBLite consensus disorder prediction 1 58 - -
Lsi01g01357 421 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Lsi01g01357 421 Gene3D Classic Zinc Finger 129 207 - -
Lsi01g01357 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Lsi01g01357 421 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 354 - -
Lsi01g01357 421 SMART c2h2final6 150 170 IPR013087 -
Lsi01g01357 421 SMART c2h2final6 73 95 IPR013087 -
Lsi01g01357 421 Gene3D Classic Zinc Finger 53 126 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01357 Lsi03g02034 CCT
Lsi01g01357 Lsi03g02034 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01357 Lsi-Chr1:11741008 Lsi07g00577 Lsi-Chr7:6115656 1.06E-112 dispersed
Lsi02g02372 Lsi-Chr2:30392161 Lsi01g01357 Lsi-Chr1:11741008 1.36E-102 transposed
Lsi06g00122 Lsi-Chr6:1182292 Lsi01g01357 Lsi-Chr1:11741008 1.50E-109 transposed
Lsi01g01357 Lsi-Chr1:11741008 Lsi03g02034 Lsi-Chr3:31704220 9.69E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24676 PF12171 zf-C2H2_jaz 5.90E-05 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01357 K25870 - csv:101221389 554.288