Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01357 | ATGTCTGAATTTGCTGATCATCAACAGCAAAGTTCTCAACTTTATCATCTTCCTCATCATAGCCCTAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTCTTCTTCCTCCTACTACTCTTCCCAAGAAGAAGAGAAATTTGCCAGGAAAACCAGATCCAGATGCAGAGGTAATAGCTTTATCTCCCAACACTCTAATGGCAACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGATCAAAACCTGCAACTTCACAGAAGAGGACACAATTTGCCATGGAAGCTAAGGCAAAGAAGTAACAAAGAAGTAGTGAAGAAGAAAGTGTATATTTGCCCAGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCACTTGGGGACCTAACTGGAATTAAAAAACATTTTAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTCTGTGATGCATTAGCTGAAGAAAGTGCAAAGTTAATCTCATCAGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATAATAATAATAATAATAATAATAATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTGAATCATCAAATACTTTCCCCCAATTTCCACCCTCTAATCTCTACCAAATCTCAAACCAAATTTTGAGTTTGAACAACAAAAACAATGCTTCAAAATCAGCCATCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAACAACAACAACAAGAAGGTTATAACTTGCCATCATTTTGCTCGGCCATGGGCGGTGGCGGTGGCGGAGGGATGTCGGCGACGGCGTTGCTGCTGAAAGCGGCGCAATTGGGATCGACAAAGAGTAATAATAACTCATTTTCAGGGAGTAATAGCGTGGGAGTAGTTATGAGTTCATCTTCAAATGATATTTCATTTGAGAGTGGTAATTATTATGGAGGAAAAGGAAATGGGTTGAGGGATTTTTTTGGGAGGAAGGAGGGAGAAAGGAATGATGAGATGATTATTCCATTAATGGAGATGACCAAATTTGCTAATTCTATGAGCTCTGACATGGGTTTGAGCCAATTCATTGGCAATAATAATTCGGTATAA | 1266 | 38.23 | MSEFADHQQQSSQLYHLPHHSPNPNPNPNPNLDSSLLPPTTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNNNNNNNNNSINQSLFNSQLQDHNFESSNTFPQFPPSNLYQISNQILSLNNKNNASKSAIMNLTLSSSANKQQQQQEGYNLPSFCSAMGGGGGGGMSATALLLKAAQLGSTKSNNNSFSGSNSVGVVMSSSSNDISFESGNYYGGKGNGLRDFFGRKEGERNDEMIIPLMEMTKFANSMSSDMGLSQFIGNNNSV | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11741008 | 11745150 | - | Lsi01G013570.1 | Lsi01g01357 | 654015 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01357 | 421 | SUPERFAMILY | beta-beta-alpha zinc fingers | 72 | 170 | IPR036236 | - | |
Lsi01g01357 | 421 | Pfam | Zinc-finger double-stranded RNA-binding | 73 | 95 | IPR022755 | - | |
Lsi01g01357 | 421 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 30 | 354 | - | - | |
Lsi01g01357 | 421 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi01g01357 | 421 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Lsi01g01357 | 421 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 75 | 95 | IPR013087 | - | |
Lsi01g01357 | 421 | Gene3D | Classic Zinc Finger | 129 | 207 | - | - | |
Lsi01g01357 | 421 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 73 | 95 | IPR013087 | - | |
Lsi01g01357 | 421 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 30 | 354 | - | - | |
Lsi01g01357 | 421 | SMART | c2h2final6 | 150 | 170 | IPR013087 | - | |
Lsi01g01357 | 421 | SMART | c2h2final6 | 73 | 95 | IPR013087 | - | |
Lsi01g01357 | 421 | Gene3D | Classic Zinc Finger | 53 | 126 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g01357 | Lsi03g02034 | CCT | |
Lsi01g01357 | Lsi03g02034 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01357 | Lsi-Chr1:11741008 | Lsi07g00577 | Lsi-Chr7:6115656 | 1.06E-112 | dispersed | |
Lsi02g02372 | Lsi-Chr2:30392161 | Lsi01g01357 | Lsi-Chr1:11741008 | 1.36E-102 | transposed | |
Lsi06g00122 | Lsi-Chr6:1182292 | Lsi01g01357 | Lsi-Chr1:11741008 | 1.50E-109 | transposed | |
Lsi01g01357 | Lsi-Chr1:11741008 | Lsi03g02034 | Lsi-Chr3:31704220 | 9.69E-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24676 | PF12171 | zf-C2H2_jaz | 5.90E-05 | CL0361 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01357 | K25870 | - | csv:101221389 | 554.288 |