Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01358 ATGTCTCTTGGGAGCTCAAAATTTGTCTTCCTTCTATTATCTTTCCTCCTCTTTTTTAATTTTGGGAAAAGCCAACAACTTATTGTGAATTACTACAACCAAACTTGCCCAAAAGCTGAAGACATAATCAAACAAGAAGTTTTCTCCTTATACAAAAAACATGGAAACTCAGCCATTTCATGGATTAGAAATCTCTTCCATGATTGCATGGTCAAGTCATGTGATGCATCTCTTTTGTTAGAGATGAAAAAGGAAGAAGGTGTATCAGAAATGAAGTCTTCAAGAAGTTTTGGGATAAGAAATCTCAAATATGTAAACAAAATCAAACAAGTCCTTGAAAATGAATGTCCCAACACTGTTTCTTGTGCTGATGTTATGGCTCTTGCTGCAAGGGATGCCATTATTCTGTTAGGGGGATTAGAGATGGAAATGAAAACAGGAAGAAGAGATGGCAAAGAAAGCTATGGAGAAATAGTGGAAGAAATGATTCCAAATCATAATGACTCTCTTTCATTGGTTCTTTCTCGCTTTCAAGATATTGCCATTGATGCTCAAGCTACCGTTGCTCTTTTAGGAGCTCACTCATTGGGTCGAGTCCACTGTGTAAATATAGTGAACCGGCTCTACCCGACCGTGGACCCAACTTTGGATCCGGATTATGCGGAGTATCTAAAAGAAAGGTGCCCGAACCCGAACCCGGATCCGAAGGCAGTCCAATACGCGAGAAATGATTTGGAAACTCCGATGGTGTTGGACAACAATTACTACAAAAACGTATTGGGCCACAAGGCCCTTTTGTTAGTGGACCAACAATTGGGCTCAAGCCCAATAACACTTCCTTATGTCCAAGAAATGGCGTCCAATAACACCTACTTTCTGGCCCAATTTGCTAGGGCTTTGCTCTTGCTGTCTGAGAACAACCCTCTCACTGATGAAGAGGGAGAGATAAGAAAGGATTGTCGACGTGTCAACAATTGGTTGGCGGAGAGAATTCATCTTTTTTGGTACACAACTACAACAGCAGCTCCTTCCAAAGGCCATTTCTCCGCTTCTGAATTTCAGCCATGGAAGACGATTTCGACTTCGGCGACAAAGTCCCGCCGGCCGTTAACCGCATGGTACTCCACGCCTCATTTCACAGGGAACACGATTGGAGATGCGGATGCAAGAGGATTAAATCCAGGACTGATTGTGCTGCTTGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAGACTCTCCCACCAAAAAAGAAGAAATCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGAGAGTAG 1356 42.92 MSLGSSKFVFLLLSFLLFFNFGKSQQLIVNYYNQTCPKAEDIIKQEVFSLYKKHGNSAISWIRNLFHDCMVKSCDASLLLEMKKEEGVSEMKSSRSFGIRNLKYVNKIKQVLENECPNTVSCADVMALAARDAIILLGGLEMEMKTGRRDGKESYGEIVEEMIPNHNDSLSLVLSRFQDIAIDAQATVALLGAHSLGRVHCVNIVNRLYPTVDPTLDPDYAEYLKERCPNPNPDPKAVQYARNDLETPMVLDNNYYKNVLGHKALLLVDQQLGSSPITLPYVQEMASNNTYFLAQFARALLLLSENNPLTDEEGEIRKDCRRVNNWLAERIHLFWYTTTTAAPSKGHFSASEFQPWKTISTSATKSRRPLTAWYSTPHFTGNTIGDADARGLNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKSVSKKKMKRERLKQGISAPGE 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11762761 11769012 + Lsi01G013580.1 Lsi01g01358 654016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01358 451 PANTHER PEROXIDASE 21 16 323 - -
Lsi01g01358 451 Pfam DNA binding protein S1FA 387 451 IPR006779 GO:0003677|GO:0005634|GO:0006355
Lsi01g01358 451 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 ProSiteProfiles Plant heme peroxidase family profile. 26 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 MobiDBLite consensus disorder prediction 427 441 - -
Lsi01g01358 451 Pfam Peroxidase 44 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 SUPERFAMILY Heme-dependent peroxidases 26 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 PANTHER PEROXIDASE 25-RELATED 16 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g01358 451 CDD secretory_peroxidase 26 323 IPR033905 GO:0004601|GO:0042744
Lsi01g01358 451 MobiDBLite consensus disorder prediction 426 451 - -
Lsi01g01358 451 Gene3D Peroxidase, domain 2 164 303 - -
Lsi01g01358 451 Gene3D - 30 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01358 Lsi-Chr1:11762761 Lsi01g00641 Lsi-Chr1:5166953 9.17E-62 dispersed
Lsi02g00601 Lsi-Chr2:5340336 Lsi01g01358 Lsi-Chr1:11762761 8.55E-131 transposed
Lsi03g02040 Lsi-Chr3:31759135 Lsi01g01358 Lsi-Chr1:11762761 1.07E-17 transposed
Lsi01g01358 Lsi-Chr1:11762761 Lsi03g02038 Lsi-Chr3:31740276 5.00E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24677 PF00141 peroxidase 6.50E-55 CL0617 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01358 K00430 - csv:101221151 560.836