Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01365 | ATGTCTCTGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGCGACTACAATGAAGAGATTAAACAGCTCTGTTTTGGGGCTTCAATGGCGGATTTGCAGATGAGTAATTTTAGTAAAGAGGAGTTTGTGCATATTCTTCGAAGGCAGAGCACAGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGTATGGGGCAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAAATTACTTTTGAATCTGAAAACCAAGAGATAAGTGATATTGACTTGAACTTGGGTATTGCCCCTCCTTGTCCATCTGAAGACCAAAAAGACAACCTTAATGGCTGTGCTCCAAATTTCTGTAGCTTAAATAAATCAGATTCTGAGAGATCTGAGTTGATAATGCTTCAAAACCATTCTTCTGTGGCTGTGAAAGCACAACCTTCTTTTATGACTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAATCTTTACCGAACTGGGGCTGGCGGCAGATCCCAATCCCCCACGGCAGAGCAACTTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCACTTCCTCCCCATCTTCTCCCACCGCCGCCGTTCCTCCGCTACTACTTTCTGCCCTCTATTCCGGCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTAA | 885 | 44.29 | MSLAYDRAAIKFRGVHADINFNISDYNEEIKQLCFGASMADLQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEITFESENQEISDIDLNLGIAPPCPSEDQKDNLNGCAPNFCSLNKSDSERSELIMLQNHSSVAVKAQPSFMTCPNFFPTYQGRAMEKIMEVESLPNWGWRQIPIPHGRATSVPFFSTAASSGFPSSPAALPPHLLPPPPFLRYYFLPSIPATNSVPHFYCST | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11841693 | 11847210 | - | Lsi01G013650.1 | Lsi01g01365 | 654023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01365 | 294 | ProSiteProfiles | AP2/ERF domain profile. | 69 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g01365 | 294 | SMART | rav1_2 | 69 | 132 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g01365 | 294 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 4 | 264 | - | - | |
Lsi01g01365 | 294 | Pfam | AP2 domain | 68 | 118 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g01365 | 294 | CDD | AP2 | 68 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g01365 | 294 | PRINTS | Ethylene responsive element binding protein signature | 70 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g01365 | 294 | PRINTS | Ethylene responsive element binding protein signature | 108 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g01365 | 294 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 4 | 264 | - | - | |
Lsi01g01365 | 294 | Gene3D | AP2/ERF domain | 68 | 128 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi01g01365 | 294 | SUPERFAMILY | DNA-binding domain | 68 | 127 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01365 | Lsi-Chr1:11841693 | Lsi10g00523 | Lsi-Chr10:7461585 | 6.69E-60 | dispersed | |
Lsi10g00359 | Lsi-Chr10:5592870 | Lsi01g01365 | Lsi-Chr1:11841693 | 7.87E-12 | dispersed | |
Lsi01g01365 | Lsi-Chr1:11841693 | Lsi10g01313 | Lsi-Chr10:17329232 | 2.89E-11 | wgd | |
Lsi01g01365 | Lsi-Chr1:11841693 | Lsi03g02059 | Lsi-Chr3:31912674 | 4.13E-06 | wgd | |
Lsi01g01365 | Lsi-Chr1:11841693 | Lsi04g00819 | Lsi-Chr4:7812200 | 3.50E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24678 | PF00847 | AP2 | 8.10E-11 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01365 | K09284 | - | csv:101211008 | 433.721 |