Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01365 ATGTCTCTGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGCGACTACAATGAAGAGATTAAACAGCTCTGTTTTGGGGCTTCAATGGCGGATTTGCAGATGAGTAATTTTAGTAAAGAGGAGTTTGTGCATATTCTTCGAAGGCAGAGCACAGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGTATGGGGCAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAAATTACTTTTGAATCTGAAAACCAAGAGATAAGTGATATTGACTTGAACTTGGGTATTGCCCCTCCTTGTCCATCTGAAGACCAAAAAGACAACCTTAATGGCTGTGCTCCAAATTTCTGTAGCTTAAATAAATCAGATTCTGAGAGATCTGAGTTGATAATGCTTCAAAACCATTCTTCTGTGGCTGTGAAAGCACAACCTTCTTTTATGACTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAATCTTTACCGAACTGGGGCTGGCGGCAGATCCCAATCCCCCACGGCAGAGCAACTTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCACTTCCTCCCCATCTTCTCCCACCGCCGCCGTTCCTCCGCTACTACTTTCTGCCCTCTATTCCGGCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTAA 885 44.29 MSLAYDRAAIKFRGVHADINFNISDYNEEIKQLCFGASMADLQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEITFESENQEISDIDLNLGIAPPCPSEDQKDNLNGCAPNFCSLNKSDSERSELIMLQNHSSVAVKAQPSFMTCPNFFPTYQGRAMEKIMEVESLPNWGWRQIPIPHGRATSVPFFSTAASSGFPSSPAALPPHLLPPPPFLRYYFLPSIPATNSVPHFYCST 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11841693 11847210 - Lsi01G013650.1 Lsi01g01365 654023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01365 294 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Lsi01g01365 294 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Lsi01g01365 294 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 4 264 - -
Lsi01g01365 294 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Lsi01g01365 294 CDD AP2 68 128 IPR001471 GO:0003700|GO:0006355
Lsi01g01365 294 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Lsi01g01365 294 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Lsi01g01365 294 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 264 - -
Lsi01g01365 294 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Lsi01g01365 294 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01365 Lsi-Chr1:11841693 Lsi10g00523 Lsi-Chr10:7461585 6.69E-60 dispersed
Lsi10g00359 Lsi-Chr10:5592870 Lsi01g01365 Lsi-Chr1:11841693 7.87E-12 dispersed
Lsi01g01365 Lsi-Chr1:11841693 Lsi10g01313 Lsi-Chr10:17329232 2.89E-11 wgd
Lsi01g01365 Lsi-Chr1:11841693 Lsi03g02059 Lsi-Chr3:31912674 4.13E-06 wgd
Lsi01g01365 Lsi-Chr1:11841693 Lsi04g00819 Lsi-Chr4:7812200 3.50E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24678 PF00847 AP2 8.10E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01365 K09284 - csv:101211008 433.721