Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01374 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTGTCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACAGAGGATGGTCGAATGTCCACTGTTCATGCCCAGGACATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTTGAAAATGATGACTCCACTCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGAGGTGGTCATGCCTTGCTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACAAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTCTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACACCACCGGGAGCAACGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGACGATGGTAGTGGCACGCAGAGTTCTTGGACCAAGCAAGCTATAGAGGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCATAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCGCCAATTATTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTGGGTAAAGGTGAATTAGGCATGCTTGATTTACAACTTGAACTCTCTACGGATCATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATTGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCAAGCAAACTTAAGTATGAGGAAACAACTGTTACTGGTCTTGCTACCAATCTTTCTGATTGTAAGATGGATGTCACTGTGTTTGAGGCACCAAGCAGCCATCCCAAGACCACAGATATTAAGAATAAAGATGTTACAGATTCAGAAGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACAACAGGGAAAGCGGTCCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACTGGGAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATCGACATGGGGTCCACTACCAATAATGCATTTTCCAAGTCCATAGTTACTAATAACAAGTCAACAATGGCATCGACAGTCAACTGTTTGTATCCATCGGCAGCTTTCCAACCTGTTAAGAATGACAGTCTATCTGTTCCACAGCAAGCTGATAATGTCAATAATGTCACAACTACAACAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCTGTATGATCCCACGCATCAGCTTGTCCACAATATTCAACAATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTGCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTGTAGAAGGTAATGCAGCAAATTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCCGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGAAGTGGCAGTGGGAGTGGGAGTGGAAGTGGAAGTGGAAGTGGAAACAAAATGGACCAAAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGAAAGGAAAGATGCTTCCGTAAAAAGAGCCATGATAGGCTTACCGATGAGACTTCTATCAATTATAGTATGCAGCAGGAGAAGTTGGTTTTGGAACCTCCAAATGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTACAAAGCTGAACTGGACTCTGTTGCCAGTGGCTACTGGACTTCTAATTCAAGAAGGCCTTCTGCCTTTCTGCATCAGAAAACTCTATTTTAG 2403 43.24 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRMSTVHAQDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNTTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDHKRERPDSTCAQVVHSNADAFANNAPIILTAGCQVQKKQLETVTLGKGELGMLDLQLELSTDHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVTVFEAPSSHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSIVTNNKSTMASTVNCLYPSAAFQPVKNDSLSVPQQADNVNNVTTTTMQAQSNFVHRESQMQQLCHLYDPTHQLVHNIQQLSSEHNDFSLKKISAAATHCGSTNVLNGTVEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGSGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKSHDRLTDETSINYSMQQEKLVLEPPNGPIPKQKEISRTETPCQGTVYKAELDSVASGYWTSNSRRPSAFLHQKTLF 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11925848 11935128 + Lsi01G013740.1 Lsi01g01374 654032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01374 800 MobiDBLite consensus disorder prediction 235 250 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 187 204 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 187 268 - -
Lsi01g01374 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 113 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 445 512 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 640 664 - -
Lsi01g01374 800 SUPERFAMILY CheY-like 81 187 IPR011006 -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 640 705 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 672 705 - -
Lsi01g01374 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR 115 735 IPR045279 GO:0009736
Lsi01g01374 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 113 IPR045279 GO:0009736
Lsi01g01374 800 Gene3D - 115 336 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 18 34 - -
Lsi01g01374 800 ProSiteProfiles Response regulatory domain profile. 63 182 IPR001789 GO:0000160
Lsi01g01374 800 MobiDBLite consensus disorder prediction 1 53 - -
Lsi01g01374 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 115 735 - -
Lsi01g01374 800 SMART REC_2 89 178 IPR001789 GO:0000160
Lsi01g01374 800 MobiDBLite consensus disorder prediction 430 512 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 1 17 - -
Lsi01g01374 800 Pfam Response regulator receiver domain 91 176 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01374 Lsi-Chr1:11925848 Lsi02g00088 Lsi-Chr2:735922 1.09E-06 dispersed
Lsi01g01374 Lsi-Chr1:11925848 Lsi05g01569 Lsi-Chr5:23459437 1.18E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24679 PF00072 Response_reg 3.70E-10 CL0304 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01374 K12129 - csv:101210765 1236.09