Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01374 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTGTCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACAGAGGATGGTCGAATGTCCACTGTTCATGCCCAGGACATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTTGAAAATGATGACTCCACTCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGAGGTGGTCATGCCTTGCTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACAAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTCTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACACCACCGGGAGCAACGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGACGATGGTAGTGGCACGCAGAGTTCTTGGACCAAGCAAGCTATAGAGGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCATAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCGCCAATTATTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTGGGTAAAGGTGAATTAGGCATGCTTGATTTACAACTTGAACTCTCTACGGATCATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATTGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCAAGCAAACTTAAGTATGAGGAAACAACTGTTACTGGTCTTGCTACCAATCTTTCTGATTGTAAGATGGATGTCACTGTGTTTGAGGCACCAAGCAGCCATCCCAAGACCACAGATATTAAGAATAAAGATGTTACAGATTCAGAAGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACAACAGGGAAAGCGGTCCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACTGGGAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATCGACATGGGGTCCACTACCAATAATGCATTTTCCAAGTCCATAGTTACTAATAACAAGTCAACAATGGCATCGACAGTCAACTGTTTGTATCCATCGGCAGCTTTCCAACCTGTTAAGAATGACAGTCTATCTGTTCCACAGCAAGCTGATAATGTCAATAATGTCACAACTACAACAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCTGTATGATCCCACGCATCAGCTTGTCCACAATATTCAACAATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTGCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTGTAGAAGGTAATGCAGCAAATTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCCGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGAAGTGGCAGTGGGAGTGGGAGTGGAAGTGGAAGTGGAAGTGGAAACAAAATGGACCAAAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGAAAGGAAAGATGCTTCCGTAAAAAGAGCCATGATAGGCTTACCGATGAGACTTCTATCAATTATAGTATGCAGCAGGAGAAGTTGGTTTTGGAACCTCCAAATGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTACAAAGCTGAACTGGACTCTGTTGCCAGTGGCTACTGGACTTCTAATTCAAGAAGGCCTTCTGCCTTTCTGCATCAGAAAACTCTATTTTAG 2403 43.24 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRMSTVHAQDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNTTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDHKRERPDSTCAQVVHSNADAFANNAPIILTAGCQVQKKQLETVTLGKGELGMLDLQLELSTDHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVTVFEAPSSHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSIVTNNKSTMASTVNCLYPSAAFQPVKNDSLSVPQQADNVNNVTTTTMQAQSNFVHRESQMQQLCHLYDPTHQLVHNIQQLSSEHNDFSLKKISAAATHCGSTNVLNGTVEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGSGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKSHDRLTDETSINYSMQQEKLVLEPPNGPIPKQKEISRTETPCQGTVYKAELDSVASGYWTSNSRRPSAFLHQKTLF 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11925848 11935128 + Lsi01G013740.1 Lsi01g01374 654032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01374 800 MobiDBLite consensus disorder prediction 235 250 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 187 204 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 187 268 - -
Lsi01g01374 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 113 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 445 512 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 640 664 - -
Lsi01g01374 800 SUPERFAMILY CheY-like 81 187 IPR011006 -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 640 705 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 672 705 - -
Lsi01g01374 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR 115 735 IPR045279 GO:0009736
Lsi01g01374 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 113 IPR045279 GO:0009736
Lsi01g01374 800 Gene3D - 115 336 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 18 34 - -
Lsi01g01374 800 ProSiteProfiles Response regulatory domain profile. 63 182 IPR001789 GO:0000160
Lsi01g01374 800 MobiDBLite consensus disorder prediction 1 53 - -
Lsi01g01374 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 115 735 - -
Lsi01g01374 800 SMART REC_2 89 178 IPR001789 GO:0000160
Lsi01g01374 800 MobiDBLite consensus disorder prediction 430 512 - -
Lsi01g01374 800 MobiDBLite consensus disorder prediction 1 17 - -
Lsi01g01374 800 Pfam Response regulator receiver domain 91 176 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01374 K12129 PRR7; pseudo-response regulator 7 - csv:101210765 1236.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01374 Lsi-Chr1:11925848 Lsi02g00088 Lsi-Chr2:735922 1.09E-06 dispersed
Lsi01g01374 Lsi-Chr1:11925848 Lsi05g01569 Lsi-Chr5:23459437 1.18E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 1 189 Response Regulator Gene Family AT1G59940 61.7 7.8e-56 214.5
Lsi06g01513 . 8 179 Response Regulator Gene Family AT1G59940 60.5 1.0e-47 187.6
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G59940 57.1 4.6e-40 162.2
Lsi09g00795 . 5 152 Response Regulator Gene Family AT1G59940 58.1 6.0e-40 161.8
Lsi04g01015 . 18 150 Response Regulator Gene Family AT1G59940 61.7 3.3e-38 156.0
Lsi04g00507 . 16 185 Response Regulator Gene Family AT1G10470 66.5 3.3e-54 208.8
Lsi06g01513 . 25 172 Response Regulator Gene Family AT1G10470 64.9 7.3e-46 181.0
Lsi03g01597 CCT 10 154 Response Regulator Gene Family AT1G10470 57.9 6.0e-40 161.4
Lsi09g00795 . 11 157 Response Regulator Gene Family AT1G10470 59.2 2.3e-39 159.5
Lsi04g01015 . 20 150 Response Regulator Gene Family AT1G10470 61.1 1.6e-37 153.3
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 11 175 Response Regulator Gene Family AT5G62920 64.2 3.7e-50 194.9
Lsi06g01513 . 22 168 Response Regulator Gene Family AT5G62920 71.4 1.1e-49 193.4
Lsi09g00795 . 11 151 Response Regulator Gene Family AT5G62920 58.9 5.9e-40 161.0
Lsi03g01597 CCT 10 156 Response Regulator Gene Family AT5G62920 55.1 2.3e-39 159.1
Lsi06g01513 . 30 167 Response Regulator Gene Family AT1G19050 73.9 2.4e-50 195.7
Lsi04g00507 . 28 185 Response Regulator Gene Family AT1G19050 59.7 8.9e-45 177.2
Lsi03g01597 CCT 8 159 Response Regulator Gene Family AT1G19050 52.6 2.1e-38 156.0
Lsi09g00795 . 3 154 Response Regulator Gene Family AT1G19050 53.3 4.7e-38 154.8
Lsi04g01015 . 20 151 Response Regulator Gene Family AT1G19050 60.6 2.3e-37 152.5
Lsi03g01597 CCT 1 160 Response Regulator Gene Family AT2G41310 72.5 2.0e-58 222.6
Lsi09g00795 . 1 153 Response Regulator Gene Family AT2G41310 64.9 2.9e-49 192.2
Lsi04g00507 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.4e-42 168.7
Lsi06g01513 . 30 164 Response Regulator Gene Family AT2G41310 61.7 2.9e-41 165.6
Lsi04g01015 . 20 151 Response Regulator Gene Family AT2G41310 55.9 1.2e-39 160.2
Lsi03g01597 CCT 1 158 Response Regulator Gene Family AT3G57040 77.8 4.5e-61 231.5
Lsi09g00795 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Lsi04g00507 . 25 158 Response Regulator Gene Family AT3G57040 60.1 5.0e-44 174.9
Lsi06g01513 . 29 164 Response Regulator Gene Family AT3G57040 61.1 1.8e-41 166.4
Lsi04g01015 . 18 151 Response Regulator Gene Family AT3G57040 56.4 6.3e-39 157.9
Lsi06g01513 . 17 187 Response Regulator Gene Family AT1G74890 68.0 2.1e-54 209.1
Lsi04g00507 . 25 184 Response Regulator Gene Family AT1G74890 60.5 7.2e-47 184.1
Lsi09g00795 . 11 146 Response Regulator Gene Family AT1G74890 60.3 7.3e-39 157.5
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G74890 54.4 1.2e-38 156.8
Lsi04g01015 . 12 147 Response Regulator Gene Family AT1G74890 58.1 4.0e-37 151.8
Lsi04g01015 . 20 152 Response Regulator Gene Family AT2G40670 70.1 2.6e-47 185.3
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT2G40670 55.3 2.4e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT2G40670 56.2 1.2e-39 159.8
Lsi06g01513 . 33 165 Response Regulator Gene Family AT2G40670 60.3 6.4e-38 154.1
Lsi04g01015 . 20 152 Response Regulator Gene Family AT3G56380 71.6 1.3e-48 189.5
Lsi06g01513 . 18 165 Response Regulator Gene Family AT3G56380 57.0 2.2e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT3G56380 54.1 4.9e-40 161.0
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT3G56380 53.9 1.9e-39 159.1
Lsi09g00795 . 11 154 Response Regulator Gene Family AT3G56380 55.2 3.0e-37 151.8
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi01g01374 . 38 185 Response Regulator Gene Family AT5G60100 60.9 6.4e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002590 2 9 3 3 2 1 4 1 1 1 1 1 2 1 1 2 1 5 1 1 1 1 1 1 1 1 1 5 1 3 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24679 PF00072 Response_reg 3.70E-10 CL0304 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01374 Lsi_Chr01 FPKM 0.0 1.067785 0.0 0.512041 0.8265 0.0 1.570254 0.616815 1.147668 1.719303