Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01390 ATGGGTAACGCCCATGGCCACCACAAGCATTTCAACCATGGCGTAAATACCTCTCAACCCACTACTAACGCTCCTTCTCCCTTCAATAAATTCTCCCCATCTGAACCCACTTCTCGAAATTCCACCTCCTCCACGAAGATGGAGTCCTTGCCCTACGCCCACGTTGATTCCAGCCTTCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCCGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGAAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTACATATCTGAGTGTGTCATCGTATAAGACTGTAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTGTTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGTAGCCTCCGAGACTATGATGACGGGTTGATTGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTCACTTCTCACACCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACGTTGGTGACCGGTGTATCCGTGTCACTATCCACCATTGTTTTTTCGATGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTGCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTTTGTGCTAGTGTAGAATCACAGTCACATATCCATTCTTACTTTTCTAACCTTCTTTCTACAATATATGTTAACAATCGGAGGTCTGTTTGTCTAGTTGCTCGTCTGTCGGCAGCAGACAAGGAAGAACCTTCAAGTGGTTGCATATGGTCTGATGGAGATTTATTTGTGAATGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGGACACTTGTTTCATCCTTCACAACATTACTGTTCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACAGATTCTCCAACATTGTATTGGATGCCAAAACATCCCAAGACCCACTGATCTGCCCTTGGTACCTTAG 1149 45.43 MGNAHGHHKHFNHGVNTSQPTTNAPSPFNKFSPSEPTSRNSTSSTKMESLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSHHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQSHIHSYFSNLLSTIYVNNRRSVCLVARLSAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAGHLFHPSQHYCSWTVEPPTDSLKQILQHCIGCQNIPRPTDLPLVP 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12042030 12046106 + Lsi01G013900.1 Lsi01g01390 654048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01390 382 MobiDBLite consensus disorder prediction 13 48 - -
Lsi01g01390 382 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Lsi01g01390 382 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Lsi01g01390 382 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Lsi01g01390 382 Pfam Pectate lyase 121 262 IPR002022 -
Lsi01g01390 382 SUPERFAMILY Pectin lyase-like 65 376 IPR011050 -
Lsi01g01390 382 MobiDBLite consensus disorder prediction 1 48 - -
Lsi01g01390 382 PANTHER PECTATE LYASE 44 375 - -
Lsi01g01390 382 Gene3D - 51 355 IPR012334 -
Lsi01g01390 382 SMART amb_all 77 286 IPR002022 -
Lsi01g01390 382 PANTHER PECTATE LYASE 18-RELATED 44 375 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01390 Lsi-Chr1:12042030 Lsi01g00449 Lsi-Chr1:3750366 2.42E-42 dispersed
Lsi01g01390 Lsi-Chr1:12042030 Lsi04g00102 Lsi-Chr4:1154248 4.56E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01390 K01728 - csv:101219724 659.448