Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g01401 | ATGAATCCCCAAGTTAGCCAATGGTGTGTCTCAGCCAAGCCTTTTTTTGCTGTAGTTTTCTTGCAGTTTGGTCTTGCAGGAATGGACATTCTGTCTAAAGCAGCTCTGAACCAAGGAATGAGCAACTATGTTCTTGTTGTTTATCGCCATGCAGTTGCAACAATTGTTATAGCTCCTTTTGCACTGATTTTTGACAAGAAGGTCAGACCAAAGATGACAATTCCAGTCTTTGCCAAGTTAATGGTCCTAAGCTTGCTAGAGCCTGTGATTGATCAAAACTTATATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTCCCTGCCATTACCTTTGTAATGGCTTGGATCCTCAGGCTTGAGAAGGTGAGAATCAAAAGCATCAGAAGCCAAGCTAAGTTAGTGGGAACCATAGCAACAGTTGGAGGAGCCATGATAATGACACTAATAAAAGGCCCAATTTTGGAGCTATTTTGGGTTAAAGAAAGAGCAAACAATCAACAACAAAGAGGTGAAATCAGTCTTCAACATACAATCAAAGGTTCAATTATGATCACAATTGGCTGCTTCAGTTGGGCCTGTTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTACCCAGCTGAGCTTTCCCTTACGGCATGGATCTGCCTGTTGGGCACTGCGGAGGGCACTGTTTTGGCTTTGGTGATGGAAAGAGGAAACGCCGCTGTTTGGTCCATTACTTGGGGAACCAAATTGCTCGCCGCTGTCTATAGTGGGATATTTTGTTCAGGACTTGCTTATTACATTCAAGGATTAGTGATGAAAGACAAAGGACCTGTGTTTGTGACTGCCTTTAGCCCATTGAGTATGGTCATTGTGGCCATTATGAGTTCCTTCATTTTAGGCGAACGTCTTTACTTTGGAAGGGTACTTGGAGCTGCTGTGATAATTGTGGGATTATACCTTGTTGTTTGGGGCAAAAACAAAGATGGGGATTATTCCTCAAGTGAAGACTTGAAATTGCCCACACAACAAACAAAAGAAATAGAAGACAACAAGATGGAAAGTTTAACGATTGAAGCAATTAATTCAATTGAACTAAAGAATAATATTGAGCAAAAATAA | 1131 | 41.03 | MNPQVSQWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPKMTIPVFAKLMVLSLLEPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVRIKSIRSQAKLVGTIATVGGAMIMTLIKGPILELFWVKERANNQQQRGEISLQHTIKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVLALVMERGNAAVWSITWGTKLLAAVYSGIFCSGLAYYIQGLVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRVLGAAVIIVGLYLVVWGKNKDGDYSSSEDLKLPTQQTKEIEDNKMESLTIEAINSIELKNNIEQK | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 12138098 | 12142665 | - | Lsi01G014010.1 | Lsi01g01401 | 654059 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g01401 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 48 | 156 | - | - | |
| Lsi01g01401 | 376 | PANTHER | WAT1-RELATED PROTEIN | 9 | 343 | IPR030184 | GO:0016021|GO:0022857 | |
| Lsi01g01401 | 376 | Coils | Coil | 366 | 376 | - | - | |
| Lsi01g01401 | 376 | Pfam | EamA-like transporter family | 187 | 326 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi01g01401 | 376 | Pfam | EamA-like transporter family | 23 | 135 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi01g01401 | 376 | PANTHER | WAT1-RELATED PROTEIN | 9 | 343 | - | - | |
| Lsi01g01401 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 233 | 331 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01401 | Lsi-Chr1:12138098 | Lsi02g01668 | Lsi-Chr2:22494244 | 2.86E-138 | dispersed | |
| Lsi09g01243 | Lsi-Chr9:20081817 | Lsi01g01401 | Lsi-Chr1:12138098 | 1.05E-57 | dispersed | |
| Lsi10g00702 | Lsi-Chr10:9835323 | Lsi01g01401 | Lsi-Chr1:12138098 | 2.29E-47 | dispersed | |
| Lsi11g00715 | Lsi-Chr11:7653360 | Lsi01g01401 | Lsi-Chr1:12138098 | 2.95E-56 | dispersed | |
| Lsi07g00326 | Lsi-Chr7:3468063 | Lsi01g01401 | Lsi-Chr1:12138098 | 6.93E-55 | transposed | |
| Lsi09g00112 | Lsi-Chr9:1057080 | Lsi01g01401 | Lsi-Chr1:12138098 | 5.47E-51 | transposed | |
| Lsi01g01401 | Lsi-Chr1:12138098 | Lsi02g01665 | Lsi-Chr2:22456647 | 9.16E-102 | wgd | |
| Lsi01g01401 | Lsi-Chr1:12138098 | Lsi04g00873 | Lsi-Chr4:8539635 | 3.75E-148 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g01401 | - | - | csv:101217902 | 684.485 |