Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01409 ATGAACATGAACAACAACAACATAACCTCCATCAAAACTGCCTCCAATGGACTCGATTTGTCCTCCATCCGTCGTAGCGGTAAACGAGCATTTGGAATCGCCCTGGCTGGAATCTCCGTCCCTTTCTTTTCCGGCATTGGTGTTGCCTTTGTCCTTCGTAAAACTGTCGACGGTGCTGACAAAGTTGGTTACGGTCAGTTCATTGTATTCATGGGCGTCGCTCTCTCTATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCAGAGCTGAAACTCCTCACTACCCAAGTCGGCGAAACCGCAATGGCTGCCGCTGCATTCAACGACGTTGCAGCTTGGATTCTCCTCGCACTCGCCGTTGCCTTAGCTGGTAACGGCGGTGAAGGTGGATCGCAAAAGAGTCCGTTAGTTTCCGTGTGGGTCTTACTTTCGGGAGCTGGGTTCGTGATTTTCATGATGGTGGTGACTCGACCCGGAATGAAATGGGTGGCGCGGCGGTGCTCGTACGAGCACGATGCGGTGGACGAGGCGTATATCTGTATGACGTTGGTCGGAGTTTTGGTTTCGGGATTTGTGACGGATTTGATAGGAATTCATTCGATTTTTGGGGGGTTTATATTTGGATTGACGATTCCGAAAGGGGGAAGATTTGCAGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGATGTGGCGAAAATTAAAGGGGGAAAAGCTTGGGGGTTGCTGGCGCTGGTTATATCGACAGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGCGTTTTTGATACCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTTTGAACGATGAAGTATTCGCCATATTAGTGTTAATGGCACTATTCACAACATTCATCACGACCCCAACCGTGATGGCGGTTTATAAGCCAGCTCGCGGCGGCTCCACCCCACCTACACATCGTAAACTTCGCGACCTCTCTGCCGATGACTCTACCGTCGACGACGAGCTTCGAATCCTCGCTTGCCTCCACAGCTCCAGCAACGTGTCGTCCCTCATCACCCTGACCGAGTCAACTCGCAGCACCAAAACTTCTTCCCTCAAACTCTTTGTAATGCACCTGGTCGAACTCACTGAGCGATCCTCTTCCATAATGATGGTCCAACGCGCCCGCAAAAACGGCTTTCCTTTCTTCGCCCGGTTCCGCAAGGCCAACGAGTGGCGGGACCAAATGGCTGCGGCCTTTCAGGCATACAGCCAATTGGGCCGAGTCAAGGTCCGACCCACTACGGCTGTCTCTTCCTTAGCCACTATGCATGAGGATATTTGCCACGTGGCGGACGATAAGAGGGTCACTATGATTATTTTGCCATTTCATCGGAATTGGAGGATGTTTGGCGGCGGCGACGGCGACGGCAAGGAGGAGGTGGAGGAGAATGTGGGCCATGGTTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCGCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCGTTGCGGCCCAGACGCCTGGGCCTGGACCCATGGTTGGTGTGGGCCAAAGGATTTGTGTTGTGTTTTTTGGTGGGCCTGATGATCGGGAGGCACTGGAGTTGGGTGGCCGAATGGCGGAGCATCCAGCGGTGAAGGTCACGGTGGTAAGGTTTCGGCCGTCGTCGTCGGATGGGATGGAGGCATTGGCAGAATTCAGAAGCAAATGGGAAGCAACAGTTGAGTACATAGAGAAGGAGGTCAGCAACATGAACATGATAGTTGAAGGGGTGGTAGCCCTTGGAAAGGAAGGCGGTTACGACCTAATCGTGGTTGGGAAGGGTCGGGTTCCCTCGAGTATGGTGGTGAAACTAGCAGACCGACCCGCAGAGCACGCTGAGTTGGGGCCAGTAGGAGACATATTGGCCAGCTCTGGCAAAGGAATAGTATCTTCAATACTGATAATTCAACAACATGGAGGAGGTGCTCATGTAGAAGAAACTCCTATTTTGAAGATAGCCCAATCAAATAAGAATGAACAGCCTTTGTCAAGTGATGGAGCTTTAATTGATCATGTATAA 2187 51.58 MNMNNNNITSIKTASNGLDLSSIRRSGKRAFGIALAGISVPFFSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSQKSPLVSVWVLLSGAGFVIFMMVVTRPGMKWVARRCSYEHDAVDEAYICMTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSADDSTVDDELRILACLHSSSNVSSLITLTESTRSTKTSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKANEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRMFGGGDGDGKEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAVAAQTPGPGPMVGVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPSSSDGMEALAEFRSKWEATVEYIEKEVSNMNMIVEGVVALGKEGGYDLIVVGKGRVPSSMVVKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGAHVEETPILKIAQSNKNEQPLSSDGALIDHV 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12218458 12224799 - Lsi01G014090.1 Lsi01g01409 654067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01409 728 Gene3D - 372 671 - -
Lsi01g01409 728 Gene3D - 15 346 IPR038770 -
Lsi01g01409 728 PANTHER CATION/H + ANTIPORTER 17 594 - -
Lsi01g01409 728 PANTHER CATION/H + ANTIPORTER 604 708 - -
Lsi01g01409 728 PANTHER BNAC06G14930D PROTEIN 17 594 - -
Lsi01g01409 728 PANTHER BNAC06G14930D PROTEIN 604 708 - -
Lsi01g01409 728 Pfam Sodium/hydrogen exchanger family 18 338 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01409 - - - cmo:103490056 1228.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01409 Lsi-Chr1:12218458 Lsi07g00921 Lsi-Chr7:10837487 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g701 . . . . . . . . . . . Cma07g00971 . Car07g00960 . Cpe10g00875 . Bhi03g01987 . . . Hepe04g0870 . . . . . . . . . . Cone10ag0300 . . Lsi01g01409 . . . . . . . . Bpe02g00838 . . . . Cmo07g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme08g02387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00730 . 11 795 Antiporter Super Family AT2G13620 73.3 0.0e+00 1157.5
Lsi01g01409 . 18 722 Antiporter Super Family AT3G53720 67.2 2.4e-265 911.8
Lsi07g00919 . 83 779 Antiporter Super Family AT3G53720 50.4 1.4e-183 640.2
Lsi07g00921 . 86 771 Antiporter Super Family AT3G53720 50.4 4.4e-182 635.2
Lsi07g00919 . 1 779 Antiporter Super Family AT5G41610 70.1 5.0e-309 1057.0
Lsi07g00921 . 7 774 Antiporter Super Family AT5G41610 68.5 6.5e-301 1030.0
Lsi07g00923 . 1 783 Antiporter Super Family AT5G41610 64.3 1.0e-285 979.5
Lsi07g00922 . 4 829 Antiporter Super Family AT5G41610 60.0 1.1e-276 949.5
Lsi07g00921 . 14 772 Antiporter Super Family AT4G23700 67.9 6.0e-294 1006.9
Lsi07g00919 . 9 796 Antiporter Super Family AT4G23700 62.6 3.5e-278 954.5
Lsi07g00923 . 11 781 Antiporter Super Family AT4G23700 62.1 1.2e-275 946.0
Lsi07g00922 . 13 846 Antiporter Super Family AT4G23700 56.6 2.7e-262 901.7
Lsi07g00921 . 7 772 Antiporter Super Family AT3G17630 63.3 2.0e-270 928.7
Lsi07g00919 . 11 779 Antiporter Super Family AT3G17630 63.5 3.4e-270 927.9
Lsi07g00923 . 11 781 Antiporter Super Family AT3G17630 60.8 1.2e-259 892.9
Lsi07g00922 . 7 827 Antiporter Super Family AT3G17630 56.1 1.0e-250 863.2
Lsi01g01409 . 18 698 Antiporter Super Family AT3G17630 50.4 4.2e-167 585.5
Lsi07g00921 . 1 775 Antiporter Super Family AT1G64170 58.2 2.7e-238 822.0
Lsi07g00919 . 15 784 Antiporter Super Family AT1G64170 56.7 1.4e-231 799.7
Lsi07g00923 . 8 783 Antiporter Super Family AT1G64170 54.5 7.6e-225 777.3
Lsi07g00922 . 1 829 Antiporter Super Family AT1G64170 50.9 2.3e-221 765.8
Lsi10g00730 . 11 795 Antiporter Super Family AT2G13620 73.3 0.0e+00 1157.5
Lsi07g00921 . 1 775 Antiporter Super Family AT1G64170 58.2 2.7e-238 822.0
Lsi07g00919 . 15 784 Antiporter Super Family AT1G64170 56.7 1.4e-231 799.7
Lsi07g00923 . 8 783 Antiporter Super Family AT1G64170 54.5 7.6e-225 777.3
Lsi07g00922 . 1 829 Antiporter Super Family AT1G64170 50.9 2.3e-221 765.8
Lsi07g00921 . 14 772 Antiporter Super Family AT4G23700 67.9 6.0e-294 1006.9
Lsi07g00919 . 9 796 Antiporter Super Family AT4G23700 62.6 3.5e-278 954.5
Lsi07g00923 . 11 781 Antiporter Super Family AT4G23700 62.1 1.2e-275 946.0
Lsi07g00922 . 13 846 Antiporter Super Family AT4G23700 56.6 2.7e-262 901.7
Lsi07g00919 . 1 779 Antiporter Super Family AT5G41610 70.1 5.0e-309 1057.0
Lsi07g00921 . 7 774 Antiporter Super Family AT5G41610 68.5 6.5e-301 1030.0
Lsi07g00923 . 1 783 Antiporter Super Family AT5G41610 64.3 1.0e-285 979.5
Lsi07g00922 . 4 829 Antiporter Super Family AT5G41610 60.0 1.1e-276 949.5
Lsi07g00921 . 7 772 Antiporter Super Family AT3G17630 63.3 2.0e-270 928.7
Lsi07g00919 . 11 779 Antiporter Super Family AT3G17630 63.5 3.4e-270 927.9
Lsi07g00923 . 11 781 Antiporter Super Family AT3G17630 60.8 1.2e-259 892.9
Lsi07g00922 . 7 827 Antiporter Super Family AT3G17630 56.1 1.0e-250 863.2
Lsi01g01409 . 18 698 Antiporter Super Family AT3G17630 50.4 4.2e-167 585.5
Lsi01g01409 . 18 722 Antiporter Super Family AT3G53720 67.2 2.4e-265 911.8
Lsi07g00919 . 83 779 Antiporter Super Family AT3G53720 50.4 1.4e-183 640.2
Lsi07g00921 . 86 771 Antiporter Super Family AT3G53720 50.4 4.4e-182 635.2
Lsi02g02561 . 47 790 Antiporter Super Family AT3G52080 54.4 1.8e-234 809.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01409 Lsi_Chr01 FPKM 2.570776 3.123502 2.40357 3.745022 2.493233 4.664065 4.616778 2.682453 2.107827 1.995641