Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01409 ATGAACATGAACAACAACAACATAACCTCCATCAAAACTGCCTCCAATGGACTCGATTTGTCCTCCATCCGTCGTAGCGGTAAACGAGCATTTGGAATCGCCCTGGCTGGAATCTCCGTCCCTTTCTTTTCCGGCATTGGTGTTGCCTTTGTCCTTCGTAAAACTGTCGACGGTGCTGACAAAGTTGGTTACGGTCAGTTCATTGTATTCATGGGCGTCGCTCTCTCTATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCAGAGCTGAAACTCCTCACTACCCAAGTCGGCGAAACCGCAATGGCTGCCGCTGCATTCAACGACGTTGCAGCTTGGATTCTCCTCGCACTCGCCGTTGCCTTAGCTGGTAACGGCGGTGAAGGTGGATCGCAAAAGAGTCCGTTAGTTTCCGTGTGGGTCTTACTTTCGGGAGCTGGGTTCGTGATTTTCATGATGGTGGTGACTCGACCCGGAATGAAATGGGTGGCGCGGCGGTGCTCGTACGAGCACGATGCGGTGGACGAGGCGTATATCTGTATGACGTTGGTCGGAGTTTTGGTTTCGGGATTTGTGACGGATTTGATAGGAATTCATTCGATTTTTGGGGGGTTTATATTTGGATTGACGATTCCGAAAGGGGGAAGATTTGCAGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGATGTGGCGAAAATTAAAGGGGGAAAAGCTTGGGGGTTGCTGGCGCTGGTTATATCGACAGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGCGTTTTTGATACCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTTTGAACGATGAAGTATTCGCCATATTAGTGTTAATGGCACTATTCACAACATTCATCACGACCCCAACCGTGATGGCGGTTTATAAGCCAGCTCGCGGCGGCTCCACCCCACCTACACATCGTAAACTTCGCGACCTCTCTGCCGATGACTCTACCGTCGACGACGAGCTTCGAATCCTCGCTTGCCTCCACAGCTCCAGCAACGTGTCGTCCCTCATCACCCTGACCGAGTCAACTCGCAGCACCAAAACTTCTTCCCTCAAACTCTTTGTAATGCACCTGGTCGAACTCACTGAGCGATCCTCTTCCATAATGATGGTCCAACGCGCCCGCAAAAACGGCTTTCCTTTCTTCGCCCGGTTCCGCAAGGCCAACGAGTGGCGGGACCAAATGGCTGCGGCCTTTCAGGCATACAGCCAATTGGGCCGAGTCAAGGTCCGACCCACTACGGCTGTCTCTTCCTTAGCCACTATGCATGAGGATATTTGCCACGTGGCGGACGATAAGAGGGTCACTATGATTATTTTGCCATTTCATCGGAATTGGAGGATGTTTGGCGGCGGCGACGGCGACGGCAAGGAGGAGGTGGAGGAGAATGTGGGCCATGGTTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCGCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCGTTGCGGCCCAGACGCCTGGGCCTGGACCCATGGTTGGTGTGGGCCAAAGGATTTGTGTTGTGTTTTTTGGTGGGCCTGATGATCGGGAGGCACTGGAGTTGGGTGGCCGAATGGCGGAGCATCCAGCGGTGAAGGTCACGGTGGTAAGGTTTCGGCCGTCGTCGTCGGATGGGATGGAGGCATTGGCAGAATTCAGAAGCAAATGGGAAGCAACAGTTGAGTACATAGAGAAGGAGGTCAGCAACATGAACATGATAGTTGAAGGGGTGGTAGCCCTTGGAAAGGAAGGCGGTTACGACCTAATCGTGGTTGGGAAGGGTCGGGTTCCCTCGAGTATGGTGGTGAAACTAGCAGACCGACCCGCAGAGCACGCTGAGTTGGGGCCAGTAGGAGACATATTGGCCAGCTCTGGCAAAGGAATAGTATCTTCAATACTGATAATTCAACAACATGGAGGAGGTGCTCATGTAGAAGAAACTCCTATTTTGAAGATAGCCCAATCAAATAAGAATGAACAGCCTTTGTCAAGTGATGGAGCTTTAATTGATCATGTATAA 2187 51.58 MNMNNNNITSIKTASNGLDLSSIRRSGKRAFGIALAGISVPFFSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSQKSPLVSVWVLLSGAGFVIFMMVVTRPGMKWVARRCSYEHDAVDEAYICMTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSADDSTVDDELRILACLHSSSNVSSLITLTESTRSTKTSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKANEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRMFGGGDGDGKEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAVAAQTPGPGPMVGVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPSSSDGMEALAEFRSKWEATVEYIEKEVSNMNMIVEGVVALGKEGGYDLIVVGKGRVPSSMVVKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGAHVEETPILKIAQSNKNEQPLSSDGALIDHV 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12218458 12224799 - Lsi01G014090.1 Lsi01g01409 654067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01409 728 Gene3D - 372 671 - -
Lsi01g01409 728 Gene3D - 15 346 IPR038770 -
Lsi01g01409 728 PANTHER CATION/H + ANTIPORTER 17 594 - -
Lsi01g01409 728 PANTHER CATION/H + ANTIPORTER 604 708 - -
Lsi01g01409 728 PANTHER BNAC06G14930D PROTEIN 17 594 - -
Lsi01g01409 728 PANTHER BNAC06G14930D PROTEIN 604 708 - -
Lsi01g01409 728 Pfam Sodium/hydrogen exchanger family 18 338 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01409 Lsi-Chr1:12218458 Lsi07g00921 Lsi-Chr7:10837487 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01409 - - cmo:103490056 1228.39