Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01415 ATGGCCGGCAAGGGAGAAGGTCCGGCTATCGGAATCGATCTCGGAACCACCTACTCTTGCGTCGGTGTTTGGCAACACGATCGTGTTGAGATCATCGCCAATGACCAGGGTAACAGGACTACACCGTCTTATGTTGCCTTCACCGACACTGAGCGTCTGATCGGTGACGCCGCTAAGAACCAGGTCGCCATGAACCCGATTAACACCGTCTTTGACGCAAAGCGGTTGATCGGTAGAAGATTCAGCGACTCTTCAGTCCAAAGCGACATCAAGCTGTGGCCATTCAAGGTCATCCCTGGACCTGGTGACAAGCCCATGATTATTGTCAGCTACAAGGGTGAAGAGAAGCAGTTTGCTGCTGAAGAAATCTCTTCCATGGTTCTCATTAAGATGCGTGAAATTGCCGAAGCTTACCTCGGTTCCACAGTGAAGAATGCCGTCGTCACTGTTCCTGCTTACTTCAACGACTCTCAACGTCAGGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAACGTCATGAGAATTATCAACGAGCCCACCGCTGCTGCCATTGCCTATGGGCTTGACAAGAAGGCAACAAGTGTCGGTGAAAAGAATGTTCTGATCTTCGATCTTGGTGGTGGTACTTTTGATGTCTCTCTTCTCACCATTGAAGAGGGTATCTTCGAGGTGAAGGCCACTGCTGGAGACACTCATCTTGGTGGTGAAGATTTTGACAACAGATTAGTCAACCACTTTGTCCAGGAATTCAAGAGGAAGCACAAGAAGGACATCAGTGGAAACCCGAGAGCTCTTAGGAGACTGAGAACTTCTTGTGAGAGAGCCAAGAGAACACTCTCGTCCACTGCTCAAACCACCATTGAGATTGATTCTTTGTACGAAGGAATTGACTTCTACTCAACCATTACTCGTGCTAGATTCGAGGAATTGAACATGGATCTTTTCAGAAAGTGTATGGAACCCGTTGAGAAGTGTTTGAGAGATGCCAAGATGGACAAGAGCACCGTCCACGATGTTGTTCTTGTTGGTGGTTCCACTAGGATTCCCAAGGTCCAACAATTGTTGCAAGACTTCTTCAATGGCAAGGAGCTTTGCAAGAGCATCAACCCCGACGAAGCCGTTGCCTACGGCGCTGCAGTTCAAGCTGCCATCTTGAGTGGTGAGGGCAATGAGAAGGTGCAGGATCTTCTTCTATTGGATGTCACCCCACTTTCTCTTGGTTTGGAAACCGCCGGAGGAGTCATGACTGTTCTGATCCCAAGGAACACCACAATTCCCACAAAGAAGGAACAGGTCTTCTCTACCTACTCCGACAACCAACCCGGTGTGTTGATCCAAGTGTACGAAGGTGAAAGAACAAGAACCCGCGACAACAACTTGCTCGGAAAATTCGAACTCTCTGGTATCCCTCCAGCTCCGAGGGGTGTTCCTCAAATCACAGTGTGCTTCGACATTGATGCTAACGGTATCTTGAATGTCTCTGCCGAAGACAAGACCACTGGACAAAAGAACAAAATCACCATTACTAATGACAAGGGTAGACTCTCCAAGGAGGAGATTGAGAAGATGGTTCAAGAGGCAGAGAAGTACAAATCTGAAGATGAGGAGCACAAGAAGAAGGTTGAAGCCAAGAATGCTTTGGAGAACTACGCTTACAACATGAGGAACACAGTGAACGATGAGAAGATTGGCGCTAAGCTTTCCCCGGCCGACAAGAAGAAGATCGAGGATGCCATTGAGCAGTCGATCCAATGGCTCGACGCCAACCAGCTCGCCGAGGCTGATGAGTTTGAGGATAAGATGAAGGAGTTGGAGAGCATCTGCAACCCAATCATCGCCAAGATGTACCAAGGTGCCGGAGCTGACATGGGCGGCGGTGCTGATGAAAGTGCTCCTTCCGGTGGTAGCGGTGCTGGTCCCAAGATTGAGGAAGTCGACTAA 1944 49.23 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDSSVQSDIKLWPFKVIPGPGDKPMIIVSYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVNDEKIGAKLSPADKKKIEDAIEQSIQWLDANQLAEADEFEDKMKELESICNPIIAKMYQGAGADMGGGADESAPSGGSGAGPKIEEVD 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12295409 12298884 + Lsi01G014150.1 Lsi01g01415 654073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01415 647 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Lsi01g01415 647 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Lsi01g01415 647 MobiDBLite consensus disorder prediction 619 647 - -
Lsi01g01415 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Lsi01g01415 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 622 IPR029048 -
Lsi01g01415 647 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
Lsi01g01415 647 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lsi01g01415 647 Coils Coil 521 541 - -
Lsi01g01415 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 396 415 - -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 477 493 - -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 209 219 - -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 36 48 - -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 146 166 - -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 369 389 - -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 8 21 - -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 58 66 - -
Lsi01g01415 647 PRINTS 70kDa heat shock protein signature 337 353 - -
Lsi01g01415 647 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Lsi01g01415 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lsi01g01415 647 Gene3D - 192 366 - -
Lsi01g01415 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lsi01g01415 647 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Lsi01g01415 647 Gene3D - 10 384 - -
Lsi01g01415 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Lsi01g01415 647 Gene3D - 545 619 IPR029048 -
Lsi01g01415 647 Gene3D - 71 126 - -
Lsi01g01415 647 Gene3D Actin; Chain A, domain 4 235 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01415 Lsi-Chr1:12295409 Lsi02g01657 Lsi-Chr2:22358510 0 dispersed
Lsi02g01976 Lsi-Chr2:25637387 Lsi01g01415 Lsi-Chr1:12295409 1.83E-105 transposed
Lsi02g01977 Lsi-Chr2:25644343 Lsi01g01415 Lsi-Chr1:12295409 1.32E-30 transposed
Lsi02g02782 Lsi-Chr2:34059972 Lsi01g01415 Lsi-Chr1:12295409 3.30E-83 transposed
Lsi03g00986 Lsi-Chr3:19053513 Lsi01g01415 Lsi-Chr1:12295409 0 transposed
Lsi04g01203 Lsi-Chr4:18571465 Lsi01g01415 Lsi-Chr1:12295409 1.21E-82 transposed
Lsi04g01917 Lsi-Chr4:26321640 Lsi01g01415 Lsi-Chr1:12295409 4.82E-62 transposed
Lsi05g01597 Lsi-Chr5:23711795 Lsi01g01415 Lsi-Chr1:12295409 2.82E-88 transposed
Lsi09g00168 Lsi-Chr9:1751792 Lsi01g01415 Lsi-Chr1:12295409 0 transposed
Lsi09g01011 Lsi-Chr9:13848300 Lsi01g01415 Lsi-Chr1:12295409 1.78E-180 transposed
Lsi11g00825 Lsi-Chr11:10226844 Lsi01g01415 Lsi-Chr1:12295409 0 transposed
Lsi01g01415 Lsi-Chr1:12295409 Lsi02g01652 Lsi-Chr2:22326465 1.90E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01415 K03283 - csv:101215599 1229.93