Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01417 | ATGGTATTTCCTTCTATCTCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCAACAGCAAACAGCAAGCCATCAATCTGGGAGTAGTAATATTATTGGAGGCAACCATTTTCAGCTGGCAGCGGCGTCGTTGCCACCTCCACAAGTTCGGCCCGGGTCGATGGCGGATCGGGCTCGAATGGCGAACCTACCGGTGCCGGAGACGGCGCTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGTGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGCTTTCAGCAGGAGAAGCAATGAGATTAAATTACACTAATGCCATTTCCACACCAAATGAAGGAGCTGTAGATTCAACTCATCATCCCATTGGGATAGGCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACCGTCTCCGTTGCTTGTAAATTCAGCTCGGTTGCTCGGAAATGGTGGCATTGACGCATCGTCGAGCTATAGCATCGTCGGGCAGATTCAAAAGAAGGTGACCGAAACGACGACGAAAATGGAGGAAGATGGGCAACAAGCTGTAGAGATGACGAATGTGGGAAAGCCATTTTGGAGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCACAATTATAA | 849 | 47.47 | MVFPSISSNYLDPTTTHQWQQQTASHQSGSSNIIGGNHFQLAAASLPPPQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTTELSAGEAMRLNYTNAISTPNEGAVDSTHHPIGIGNFLGFDQIQWRPQLQLHQTQPSPLLVNSARLLGNGGIDASSSYSIVGQIQKKVTETTTKMEEDGQQAVEMTNVGKPFWRVVGGSDHRHYWSGFNPSSSSHSQL | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12314911 | 12316660 | + | Lsi01G014170.1 | Lsi01g01417 | 654075 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01417 | 282 | MobiDBLite | consensus disorder prediction | 130 | 145 | - | - | |
Lsi01g01417 | 282 | Pfam | Dof domain, zinc finger | 71 | 126 | IPR003851 | GO:0003677|GO:0006355 | |
Lsi01g01417 | 282 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 17 | 279 | IPR045174 | GO:0003700|GO:0006355 | |
Lsi01g01417 | 282 | ProSitePatterns | Zinc finger Dof-type signature. | 74 | 110 | IPR003851 | GO:0003677|GO:0006355 | |
Lsi01g01417 | 282 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 17 | 279 | - | - | |
Lsi01g01417 | 282 | MobiDBLite | consensus disorder prediction | 117 | 145 | - | - | |
Lsi01g01417 | 282 | ProSiteProfiles | Zinc finger Dof-type profile. | 72 | 126 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g01417 | Lsi03g02101 | CCT | |
Lsi01g01417 | Lsi03g02101 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01417 | Lsi-Chr1:12314911 | Lsi02g01450 | Lsi-Chr2:20161972 | 6.31E-31 | dispersed | |
Lsi01g01417 | Lsi-Chr1:12314911 | Lsi10g01367 | Lsi-Chr10:17825835 | 2.05E-40 | wgd | |
Lsi01g01417 | Lsi-Chr1:12314911 | Lsi02g01651 | Lsi-Chr2:22311974 | 2.28E-40 | wgd | |
Lsi01g01417 | Lsi-Chr1:12314911 | Lsi02g01364 | Lsi-Chr2:18392802 | 1.94E-47 | wgd | |
Lsi01g01417 | Lsi-Chr1:12314911 | Lsi03g02101 | Lsi-Chr3:32272111 | 6.46E-47 | wgd | |
Lsi01g01417 | Lsi-Chr1:12314911 | Lsi04g00882 | Lsi-Chr4:8680085 | 1.99E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24682 | PF02701 | zf-Dof | 3.90E-31 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01417 | - | - | csv:101207098 | 473.396 |