Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01417 ATGGTATTTCCTTCTATCTCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCAACAGCAAACAGCAAGCCATCAATCTGGGAGTAGTAATATTATTGGAGGCAACCATTTTCAGCTGGCAGCGGCGTCGTTGCCACCTCCACAAGTTCGGCCCGGGTCGATGGCGGATCGGGCTCGAATGGCGAACCTACCGGTGCCGGAGACGGCGCTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGTGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGCTTTCAGCAGGAGAAGCAATGAGATTAAATTACACTAATGCCATTTCCACACCAAATGAAGGAGCTGTAGATTCAACTCATCATCCCATTGGGATAGGCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACCGTCTCCGTTGCTTGTAAATTCAGCTCGGTTGCTCGGAAATGGTGGCATTGACGCATCGTCGAGCTATAGCATCGTCGGGCAGATTCAAAAGAAGGTGACCGAAACGACGACGAAAATGGAGGAAGATGGGCAACAAGCTGTAGAGATGACGAATGTGGGAAAGCCATTTTGGAGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCACAATTATAA 849 47.47 MVFPSISSNYLDPTTTHQWQQQTASHQSGSSNIIGGNHFQLAAASLPPPQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTTELSAGEAMRLNYTNAISTPNEGAVDSTHHPIGIGNFLGFDQIQWRPQLQLHQTQPSPLLVNSARLLGNGGIDASSSYSIVGQIQKKVTETTTKMEEDGQQAVEMTNVGKPFWRVVGGSDHRHYWSGFNPSSSSHSQL 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12314911 12316660 + Lsi01G014170.1 Lsi01g01417 654075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01417 282 MobiDBLite consensus disorder prediction 130 145 - -
Lsi01g01417 282 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Lsi01g01417 282 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 279 IPR045174 GO:0003700|GO:0006355
Lsi01g01417 282 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Lsi01g01417 282 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 17 279 - -
Lsi01g01417 282 MobiDBLite consensus disorder prediction 117 145 - -
Lsi01g01417 282 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01417 - - - csv:101207098 473.396
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g01417 Lsi03g02101 CCT
Lsi01g01417 Lsi03g02101 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01450 Lsi-Chr2:20161972 6.31E-31 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi10g01367 Lsi-Chr10:17825835 2.05E-40 wgd
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01651 Lsi-Chr2:22311974 2.28E-40 wgd
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01364 Lsi-Chr2:18392802 1.94E-47 wgd
Lsi01g01417 Lsi-Chr1:12314911 Lsi03g02101 Lsi-Chr3:32272111 6.46E-47 wgd
Lsi01g01417 Lsi-Chr1:12314911 Lsi04g00882 Lsi-Chr4:8680085 1.99E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g716 Blo01g01119 . . . Bpe04g01330 Bpe03g01040 . . Cmo06g00304 Cmo14g00147 Cma03g00431 . Car03g00379 . . Cpe10g00881 Cpe08g01160 . . . . . . . Cla04g00818 Cam04g0898 Cec04g0967 Cco04g1020 Clacu04g0873 Cmu04g0866 Cre01g0476 Cone3ag0333 Cone10ag0305 Cone13ag1337 Cone19ag1320 Lsi01g01417 Csa04g01478 . Cme04g02612 Blo07g01180 . . Bda05g00969 . Bpe02g00845 Bma01g01875 . Sed02g0688 Cmo03g00443 . Cma06g00304 Cma14g00157 Car06g00263 Car14g00128 Cpe03g00124 . Bhi11g02243 Tan08g1993 Cmetu08g1957 . . . . Cla10g02000 Cam10g2068 Cec10g2109 Cco10g2091 Clacu10g2073 Cmu10g2821 Cre10g2214 Lsi03g02101 Csa03g03190 Chy04g02140 Cme08g02396
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00805 CCT 16 176 C2C2-Dof Transcription Factor Family AT1G29160 58.3 9.8e-45 176.8
Lsi01g00243 CCT 6 162 C2C2-Dof Transcription Factor Family AT1G29160 50.9 2.8e-39 158.7
Lsi02g00805 CCT 16 174 C2C2-Dof Transcription Factor Family AT2G34140 56.5 6.8e-43 170.6
Lsi03g02101 CCT,ECH 46 178 C2C2-Dof Transcription Factor Family AT2G37590 68.1 6.6e-42 168.3
Lsi04g00882 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 8.0e-40 161.4
Lsi02g01651 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 63.3 3.4e-38 156.0
Lsi02g01364 . 64 138 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Lsi03g01499 . 135 514 C2C2-Dof Transcription Factor Family AT5G39660 52.5 1.2e-81 300.8
Lsi02g01364 . 65 138 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.3e-38 155.6
Lsi01g01417 CCT,ECH 51 124 C2C2-Dof Transcription Factor Family AT5G02460 87.8 5.9e-37 152.1
Lsi04g00882 . 55 236 C2C2-Dof Transcription Factor Family AT3G55370 50.7 2.1e-41 166.8
Lsi02g01364 . 49 142 C2C2-Dof Transcription Factor Family AT3G55370 76.6 3.4e-39 159.5
Lsi03g02101 CCT,ECH 99 181 C2C2-Dof Transcription Factor Family AT3G55370 79.5 1.2e-36 151.0
Lsi06g01388 CCT 28 328 C2C2-Dof Transcription Factor Family AT5G60850 51.9 9.1e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012147 0 0 1 0 0 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24682 PF02701 zf-Dof 3.90E-31 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01417 Lsi_Chr01 FPKM 5.866371 7.541484 3.554299 2.953964 5.280215 5.515802 4.510875 6.211422 6.83804 5.553566