Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01417 ATGGTATTTCCTTCTATCTCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCAACAGCAAACAGCAAGCCATCAATCTGGGAGTAGTAATATTATTGGAGGCAACCATTTTCAGCTGGCAGCGGCGTCGTTGCCACCTCCACAAGTTCGGCCCGGGTCGATGGCGGATCGGGCTCGAATGGCGAACCTACCGGTGCCGGAGACGGCGCTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGTGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGCTTTCAGCAGGAGAAGCAATGAGATTAAATTACACTAATGCCATTTCCACACCAAATGAAGGAGCTGTAGATTCAACTCATCATCCCATTGGGATAGGCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACCGTCTCCGTTGCTTGTAAATTCAGCTCGGTTGCTCGGAAATGGTGGCATTGACGCATCGTCGAGCTATAGCATCGTCGGGCAGATTCAAAAGAAGGTGACCGAAACGACGACGAAAATGGAGGAAGATGGGCAACAAGCTGTAGAGATGACGAATGTGGGAAAGCCATTTTGGAGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCACAATTATAA 849 47.47 MVFPSISSNYLDPTTTHQWQQQTASHQSGSSNIIGGNHFQLAAASLPPPQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTTELSAGEAMRLNYTNAISTPNEGAVDSTHHPIGIGNFLGFDQIQWRPQLQLHQTQPSPLLVNSARLLGNGGIDASSSYSIVGQIQKKVTETTTKMEEDGQQAVEMTNVGKPFWRVVGGSDHRHYWSGFNPSSSSHSQL 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12314911 12316660 + Lsi01G014170.1 Lsi01g01417 654075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01417 282 MobiDBLite consensus disorder prediction 130 145 - -
Lsi01g01417 282 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Lsi01g01417 282 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 279 IPR045174 GO:0003700|GO:0006355
Lsi01g01417 282 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Lsi01g01417 282 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 17 279 - -
Lsi01g01417 282 MobiDBLite consensus disorder prediction 117 145 - -
Lsi01g01417 282 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01417 Lsi03g02101 CCT
Lsi01g01417 Lsi03g02101 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01450 Lsi-Chr2:20161972 6.31E-31 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi10g01367 Lsi-Chr10:17825835 2.05E-40 wgd
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01651 Lsi-Chr2:22311974 2.28E-40 wgd
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01364 Lsi-Chr2:18392802 1.94E-47 wgd
Lsi01g01417 Lsi-Chr1:12314911 Lsi03g02101 Lsi-Chr3:32272111 6.46E-47 wgd
Lsi01g01417 Lsi-Chr1:12314911 Lsi04g00882 Lsi-Chr4:8680085 1.99E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24682 PF02701 zf-Dof 3.90E-31 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01417 - - csv:101207098 473.396