Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01425 ATGGAACAGGAATGGTTAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACCGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGACGAGGCTCAGTCTAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAGTTCTTCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCTGGCCGTGATCTGACCGATGCCCTCATGAAAATTTTAACTGAGCGTGGTTATTCATTCACCACCACAGCAGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTATGAGCAAGAATTAGAAACCTCTAAGACCAGCTCTTCTGTTGAGAAGAGTTACGAGTTGCCTGATGGTCAGGTGATTACCATTGGTGCCGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCACGAAACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAGGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCAAGCAGTATGAAGATTAAGGTGGTTGCGCCGCCTGAAAGGAAATACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTAA 1065 46.85 MEQEWLRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12390072 12393122 + Lsi01G014250.1 Lsi01g01425 654083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01425 354 CDD NBD_sugar-kinase_HSP70_actin 53 160 - -
Lsi01g01425 354 PRINTS Actin signature 119 138 IPR004000 -
Lsi01g01425 354 PRINTS Actin signature 28 39 IPR004000 -
Lsi01g01425 354 PRINTS Actin signature 5 14 IPR004000 -
Lsi01g01425 354 PRINTS Actin signature 40 62 IPR004000 -
Lsi01g01425 354 PRINTS Actin signature 94 107 IPR004000 -
Lsi01g01425 354 PRINTS Actin signature 215 231 IPR004000 -
Lsi01g01425 354 Gene3D - 7 348 - -
Lsi01g01425 354 SUPERFAMILY Actin-like ATPase domain 126 354 IPR043129 -
Lsi01g01425 354 PANTHER ACTIN-97 6 353 - -
Lsi01g01425 354 Pfam Actin 7 354 IPR004000 -
Lsi01g01425 354 ProSitePatterns Actins and actin-related proteins signature. 83 95 IPR020902 -
Lsi01g01425 354 ProSitePatterns Actins signature 1. 32 42 IPR004001 -
Lsi01g01425 354 SUPERFAMILY Actin-like ATPase domain 5 132 IPR043129 -
Lsi01g01425 354 Gene3D - 117 317 - -
Lsi01g01425 354 Gene3D Actin; Chain A, domain 4 159 250 - -
Lsi01g01425 354 ProSitePatterns Actins signature 2. 335 343 IPR004001 -
Lsi01g01425 354 SMART actin_3 7 354 IPR004000 -
Lsi01g01425 354 PANTHER ACTIN 6 353 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01425 Lsi-Chr1:12390072 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi04g00892 Lsi-Chr4:8886235 Lsi01g01425 Lsi-Chr1:12390072 1.92E-13 dispersed
Lsi11g00335 Lsi-Chr11:3463102 Lsi01g01425 Lsi-Chr1:12390072 6.76E-21 dispersed
Lsi03g01737 Lsi-Chr3:28750428 Lsi01g01425 Lsi-Chr1:12390072 2.89E-83 transposed
Lsi05g00517 Lsi-Chr5:6473851 Lsi01g01425 Lsi-Chr1:12390072 2.18E-38 transposed
Lsi01g01425 Lsi-Chr1:12390072 Lsi10g01374 Lsi-Chr10:17888505 0 wgd
Lsi01g01425 Lsi-Chr1:12390072 Lsi02g01634 Lsi-Chr2:22218446 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01425 K10355 - csv:101214246 690.649