Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01425 | ATGGAACAGGAATGGTTAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACCGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGACGAGGCTCAGTCTAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAGTTCTTCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCTGGCCGTGATCTGACCGATGCCCTCATGAAAATTTTAACTGAGCGTGGTTATTCATTCACCACCACAGCAGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTATGAGCAAGAATTAGAAACCTCTAAGACCAGCTCTTCTGTTGAGAAGAGTTACGAGTTGCCTGATGGTCAGGTGATTACCATTGGTGCCGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCACGAAACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAGGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCAAGCAGTATGAAGATTAAGGTGGTTGCGCCGCCTGAAAGGAAATACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTAA | 1065 | 46.85 | MEQEWLRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12390072 | 12393122 | + | Lsi01G014250.1 | Lsi01g01425 | 654083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01425 | 354 | CDD | NBD_sugar-kinase_HSP70_actin | 53 | 160 | - | - | |
Lsi01g01425 | 354 | PRINTS | Actin signature | 119 | 138 | IPR004000 | - | |
Lsi01g01425 | 354 | PRINTS | Actin signature | 28 | 39 | IPR004000 | - | |
Lsi01g01425 | 354 | PRINTS | Actin signature | 5 | 14 | IPR004000 | - | |
Lsi01g01425 | 354 | PRINTS | Actin signature | 40 | 62 | IPR004000 | - | |
Lsi01g01425 | 354 | PRINTS | Actin signature | 94 | 107 | IPR004000 | - | |
Lsi01g01425 | 354 | PRINTS | Actin signature | 215 | 231 | IPR004000 | - | |
Lsi01g01425 | 354 | Gene3D | - | 7 | 348 | - | - | |
Lsi01g01425 | 354 | SUPERFAMILY | Actin-like ATPase domain | 126 | 354 | IPR043129 | - | |
Lsi01g01425 | 354 | PANTHER | ACTIN-97 | 6 | 353 | - | - | |
Lsi01g01425 | 354 | Pfam | Actin | 7 | 354 | IPR004000 | - | |
Lsi01g01425 | 354 | ProSitePatterns | Actins and actin-related proteins signature. | 83 | 95 | IPR020902 | - | |
Lsi01g01425 | 354 | ProSitePatterns | Actins signature 1. | 32 | 42 | IPR004001 | - | |
Lsi01g01425 | 354 | SUPERFAMILY | Actin-like ATPase domain | 5 | 132 | IPR043129 | - | |
Lsi01g01425 | 354 | Gene3D | - | 117 | 317 | - | - | |
Lsi01g01425 | 354 | Gene3D | Actin; Chain A, domain 4 | 159 | 250 | - | - | |
Lsi01g01425 | 354 | ProSitePatterns | Actins signature 2. | 335 | 343 | IPR004001 | - | |
Lsi01g01425 | 354 | SMART | actin_3 | 7 | 354 | IPR004000 | - | |
Lsi01g01425 | 354 | PANTHER | ACTIN | 6 | 353 | IPR004000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01425 | Lsi-Chr1:12390072 | Lsi04g00880 | Lsi-Chr4:8665301 | 0 | dispersed | |
Lsi04g00892 | Lsi-Chr4:8886235 | Lsi01g01425 | Lsi-Chr1:12390072 | 1.92E-13 | dispersed | |
Lsi11g00335 | Lsi-Chr11:3463102 | Lsi01g01425 | Lsi-Chr1:12390072 | 6.76E-21 | dispersed | |
Lsi03g01737 | Lsi-Chr3:28750428 | Lsi01g01425 | Lsi-Chr1:12390072 | 2.89E-83 | transposed | |
Lsi05g00517 | Lsi-Chr5:6473851 | Lsi01g01425 | Lsi-Chr1:12390072 | 2.18E-38 | transposed | |
Lsi01g01425 | Lsi-Chr1:12390072 | Lsi10g01374 | Lsi-Chr10:17888505 | 0 | wgd | |
Lsi01g01425 | Lsi-Chr1:12390072 | Lsi02g01634 | Lsi-Chr2:22218446 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01425 | K10355 | - | csv:101214246 | 690.649 |