Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01428 ATGGGTAATCGTATTGGGAAGATTGGCCACTGTTTCGCCGGCGCCGGCGATATCTCCCGCCGTTATGAGCCCGCTGACATTATCTCCGACCCCCACGATGGGGGTTTCGGTCATTCCTTCTACTATCTCCCACCCGACCCACATACCCTCTCCTCCTCCAAAGATTTCTCCGACGACTACATCTCTCCGGTGACCATTTTCCGGTCGATTTCCGGCGCCTCTGTAAGTGCCAACGTCTCAACGCCGCTCTCCACTTCTCTTGTCGATCTCTATCCTTACAGCACCACGTTTGATCGGGCCGCAGCTTTCGATTGCTCGAATTCCTTCGCCTCTGTGCCGTTGCAGCCGGTGCCTCGCCAGTCGATGTCGGGAAATTCCGGTGGATTCCCTTCTTCGGGTCCGCTGGAGAGAGGGTTTTTATCCGGACCCTTGGCCGCCAGGACCTTCGAATCGGGTCCGATTGATCGAGTGGTTTATTCCGGTCCGATTGAGAAGGGCGGCGGACCCGAGAAATTGCAGAGGAACGTCTCTCATGGCGGCGTTGGAGACGGAGAACCAAAATCGAAAAGAAGAAGAAGAAGAAGGAGTCTCATTCGGATTCTGAAGAGAGCCATATCCAAAACTATTTCTCTAAACCAGAAGGCAGCGAGTTCGAGAGTGAGAGAATCGGAATCGTACAAGCATAATGAAAATGCTGCAGCTTCTGCAGCTCAGACTCAGAGCAGTGTCCATTTGAGTAGCCATGCGAGCTTGACTCAGGAAGACGACGGCGATTACTTTCTCGGCGGTCAGAGTGTGCAGTGGGCGCAGGGGAAGGCCGGTGAGGATAGAGTTCACGTGGTGATATCGGAGGATAACGGTTGGGTTTTCGTCGGAATTTATGATGGATTCAACGGCCCTGATGCTCCTGATTACTTACTCGCTAATCTCTACACTGCCGTTCTTAAAGAGCTCAAGGGCTTGATTTGGAGTGATAAGTTTGATTCAACTGCAACTTCGTCTTCCATGAACTCATCCAACTCTGCTTCAATTGAGGAAGACGATCATGGAACAACCCACATGAAAAATCAGGAGAATGATCATCAATCTACAGAGAACTTCCCGGCGGAAAATGGGGTTGTGAATTTGGAGGCTGATTCAGTGAGGACAAGAGAAAGAGTTTATAATACGAACTATAGGACGAGTCAGCTGATGAAGAAGGCCGATCAGAATCCAAAGAATTGGAAATGTGAATGGGAAAGGGAAAGATTAGGATTAGAGGGAAAGTTGAACAATAGACAATTAGATCACCACCAAATATGGGATGAATCAACAGCAATCAATCATTCTGAGGTGTTGAATGCTCTGTCTCAAGCATTGAGAAAAACAGAGGAAGCATATCTGCAAAATGCAGACAAGATGGTCAAAAGAAATCCTGAGCTAGCTCTTATGGGTTCTTGTGTTTTGGTCATGTTGATGAGAGGTGAAGATGTTTACTTGATGAATGTAGGAGACAGCCGCGCTATTGTAGCGCAGCAATTCGAACCTGATTTCGGGACTGGAAAGCCATACAGAGACTTGGAGAGAATCAATGAAGGAACACTACGAGTATTTGAATCCTCTAATGGAGTAGAGTTTGAAAGATTAAAAGCCTTGGCTTCCCATCAGCTTACGATGGACCACAGCACTTACACAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATCCTGATGATGCTTCCGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAGATCACGCGGGCGTTCGGAGCTGGCTTTCTGAAACAGCCAAAGTGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACTCTATGCCATTATAAACTCAGCCCAACAGACAGATTCTTGATATTGTCCTCTGATGGACTCTACCAGTACTTTACCAATGAAGAAGCTGTTGCTCAAGTAGAGTCCTTCATTGCTTCTTTTCCTGAAGGAGATCCTGCTCAAAATCTAATTGAAGAAGTATTGTTCCGAGCAGCTAAAAAATACGGAATGGACTTCCATGAGCTGCTTGATATCCCACAAGGGGAGCGGCGGAAGTACCACGATGACGTTTCGGTAATCATCATTTCATTTGAAGGAAGAATTTGGCATTCGTTGATGTAA 2175 46.99 MGNRIGKIGHCFAGAGDISRRYEPADIISDPHDGGFGHSFYYLPPDPHTLSSSKDFSDDYISPVTIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRQSMSGNSGGFPSSGPLERGFLSGPLAARTFESGPIDRVVYSGPIEKGGGPEKLQRNVSHGGVGDGEPKSKRRRRRRSLIRILKRAISKTISLNQKAASSRVRESESYKHNENAAASAAQTQSSVHLSSHASLTQEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYTAVLKELKGLIWSDKFDSTATSSSMNSSNSASIEEDDHGTTHMKNQENDHQSTENFPAENGVVNLEADSVRTRERVYNTNYRTSQLMKKADQNPKNWKCEWERERLGLEGKLNNRQLDHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVKRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQFEPDFGTGKPYRDLERINEGTLRVFESSNGVEFERLKALASHQLTMDHSTYTEEEVQRIKNAHPDDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYFTNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSVIIISFEGRIWHSLM 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12411139 12414065 - Lsi01G014280.1 Lsi01g01428 654086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01428 724 Gene3D - 227 720 IPR036457 -
Lsi01g01428 724 SUPERFAMILY PP2C-like 271 716 IPR036457 -
Lsi01g01428 724 Pfam Protein phosphatase 2C 425 687 IPR001932 -
Lsi01g01428 724 MobiDBLite consensus disorder prediction 346 360 - -
Lsi01g01428 724 CDD PP2Cc 434 715 IPR001932 -
Lsi01g01428 724 SMART PP2C_4 249 713 IPR001932 -
Lsi01g01428 724 MobiDBLite consensus disorder prediction 330 373 - -
Lsi01g01428 724 MobiDBLite consensus disorder prediction 212 249 - -
Lsi01g01428 724 MobiDBLite consensus disorder prediction 229 249 - -
Lsi01g01428 724 PANTHER PROTEIN PHOSPHATASE 2C 20 722 IPR015655 GO:0004722|GO:0006470
Lsi01g01428 724 MobiDBLite consensus disorder prediction 160 194 - -
Lsi01g01428 724 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 20 722 - -
Lsi01g01428 724 ProSiteProfiles PPM-type phosphatase domain profile. 260 715 IPR001932 -
Lsi01g01428 724 MobiDBLite consensus disorder prediction 330 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01428 Lsi-Chr1:12411139 Lsi07g01218 Lsi-Chr7:17726057 1.65E-33 dispersed
Lsi05g01536 Lsi-Chr5:23151768 Lsi01g01428 Lsi-Chr1:12411139 2.87E-14 transposed
Lsi01g01428 Lsi-Chr1:12411139 Lsi10g01376 Lsi-Chr10:17901763 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01428 - - bhj:120069881 1363.21