Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01430 ATGAAGGTGCCATGTAGGAAACAAGGCGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTACTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGATCAAACACCAATTGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCGCGTTTGA 315 51.11 MKVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12459638 12460757 - Lsi01G014300.1 Lsi01g01430 654088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01430 104 PANTHER EXPANSIN-A15 2 103 IPR002963 GO:0009664
Lsi01g01430 104 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 20 99 IPR007117 -
Lsi01g01430 104 Gene3D - 10 102 IPR036749 -
Lsi01g01430 104 SUPERFAMILY PHL pollen allergen 7 99 IPR036749 -
Lsi01g01430 104 Pfam Expansin C-terminal domain 11 88 IPR007117 -
Lsi01g01430 104 PRINTS Expansin/Lol pI family signature 47 61 IPR007118 GO:0005576
Lsi01g01430 104 PRINTS Expansin/Lol pI family signature 85 99 IPR007118 GO:0005576
Lsi01g01430 104 PRINTS Expansin signature 9 21 IPR002963 GO:0009664
Lsi01g01430 104 PRINTS Expansin signature 85 101 IPR002963 GO:0009664
Lsi01g01430 104 PRINTS Expansin signature 21 42 IPR002963 GO:0009664
Lsi01g01430 104 PRINTS Expansin signature 56 77 IPR002963 GO:0009664
Lsi01g01430 104 PANTHER EXPANSIN 2 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01430 Lsi-Chr1:12459638 Lsi03g00266 Lsi-Chr3:3285863 1.15E-46 dispersed
Lsi01g01430 Lsi-Chr1:12459638 Lsi10g01386 Lsi-Chr10:17970338 1.01E-64 wgd
Lsi01g01430 Lsi-Chr1:12459638 Lsi02g01353 Lsi-Chr2:18139244 1.77E-63 wgd
Lsi01g01430 Lsi-Chr1:12459638 Lsi04g00889 Lsi-Chr4:8841940 1.65E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01430 - - csv:101212872 208.379