Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01431 ATGGCTTCTCTCTCTCTCCTCTGCTCCATTGCCTTTGCCTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCTCCTGGCAGGATGCTCACGCCACCTTCTACGGCGGCAGTGATGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCCGCTCTCAGTACTGCTCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTAGATGGTGCCATCCTGGTAGCCCATCTATTTTCATTACAGCTACCAATTTTTGTCCCCCCAATTTTGCTCTGCCTAATGACAATGGCGGTTGGTGTAACCCTCCTCGCACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCACTTACCGCCGGTGA 480 54.58 MASLSLLCSIAFASFSSLFLLSHARIPGVYSGGSWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVTYRR 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12461124 12461818 - Lsi01G014310.1 Lsi01g01431 654089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01431 159 SUPERFAMILY Barwin-like endoglucanases 34 159 IPR036908 -
Lsi01g01431 159 Pfam Lytic transglycolase 70 157 IPR009009 -
Lsi01g01431 159 SMART dpbb_1 70 157 IPR007112 -
Lsi01g01431 159 Gene3D - 22 159 IPR036908 -
Lsi01g01431 159 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 159 IPR007112 -
Lsi01g01431 159 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Lsi01g01431 159 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Lsi01g01431 159 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Lsi01g01431 159 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Lsi01g01431 159 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Lsi01g01431 159 PANTHER EXPANSIN 8 159 - -
Lsi01g01431 159 PANTHER EXPANSIN-A15 8 159 IPR002963 GO:0009664
Lsi01g01431 159 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Lsi01g01431 159 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Lsi01g01431 159 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Lsi01g01431 159 PRINTS Expansin/Lol pI family signature 150 159 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01431 Lsi-Chr1:12461124 Lsi10g01386 Lsi-Chr10:17970338 1.18E-97 dispersed
Lsi01g01431 Lsi-Chr1:12461124 Lsi02g01625 Lsi-Chr2:22146003 8.69E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01431 - - csv:101212872 308.916