Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01442 ATGGCGGCTATCTTCTTCCTCACCTTATTTCTTTTGATTCCAATTTCTCTAGCTTCTGGAGATCAAAGCTTCATCTTCAATGGCTTCAACTCCGGCGATTTAATCCTTGACGGTGTCGCCGAAGTAACTTCCAATGGCCTTTTGAAGCTCACCAACGACCACGACCAACAAATTGGCCACGCCTTTTACCCCAATTCCATTTCCTTCAAATCCCCATTAAACAATTCCTCAATTTCCTCCTTCTCTGCAACTTTCGTCTTCGCCATAATCTCAGAATACGAAGATCTCGGCGGCCATGGAATCGCCTTCGTTGTCTCTCCGACGAAAGGTCTCCCCGGAGCTCGGCCGAGCGAAAGTCTCGGTCTATTCAACGAATCCAACAACGGGAATGAAAGGAATCACATCTTCGCCGTTGAACTTGACACGATTCAGAATCTTGATCTTAAAGACATCAACAAGAATCATGTCGGAATCAACATTAACGGACTGGTGTCGGAGAAGGCGGAGCGGGCAGGGTATTGGGTGGACGGCGAATTTAGAAATTTGACGTTAATCAGTGGTGAACCGATGCAACTTTGGGTTGAATACGACGGTTTTGAAAAGCAAATTAACGTTACTCTGGCTTCAATTGAAATTAGAGATAAACCCAAAATCCCCCTTTTATCTTACCGGCGAGACTTATCGTCGGTCATCAACGACATCATGTACATCGGATTCTCATCATCGACAGGCTCCATTACGACCTCGCATTATGTTTTAGCTTGGAGCTTCAGCGTCAATGGCGAAGCGCAGAGGCTTGCTCTGTCTCAACTCCCCAATCTTCCATCTCGGCCGGAAAAACAGAGACGATCTAAATTCTTGACAGTGGGTTTACCGTTGATTTCCGTTTCAGTAGCTTTAATGACAGTTTTGGGGGTAATTTATTTCATATACCGGAGACGGAAATTCGCAGAGATTCTAGAGGATTGGGAAATGGAATACGGACCACAAAGATTCAAATACAAGGATTTATACAGAGCAACAAAGGGATTCAGGGAAAAGGAATTTCTGGGATTTGGTGGATTCGGTCGAGTTTACAAAGGGGTATTACCAAATTCGAAGATCGAAGTAGCAGTGAAGAAAATCTCACACGAATCGAGACAGGGGATGAAGGAATTCGTGGCGGAGATAGTAAGTGTAGGGCGGCTCCGGCACCGGAACTTGGTGGCGCTGTTGGGGTATTGTCGGCGGAAAGGGGAGCTGTTTTTGGTGTACGATTACATGAGGAATGGAAGCTTGGATTCGTATTTACATGAGCTGCCGGAAATTACAATAAATTGGGAACAGAGATTTGAGATAATAAAAGGAGTGGCGTCGGGGCTGTTTTATCTTCATGAACAGTGCGAGAAAGTGGTGATTCATAGAGATGTGAAGGCGAGTAATGTGTTGCTGGATGATGAATTCAATGGCCGATTGGGAGATTTTGGTTTGGCAAAAATGTATGAGCGTGGCGCTGATCCTCGAACCACCCACGTCGTTGGAACTCTTGGGTATCTAGCGCCGGAGCACATAAGAACAGGGAGAGCCACAACCAGAACAGACGTATATGCATTTGGGGCATTTCTTCTGGAAGTGGCCTGTGGAAGAAGGCCGATTCATCCTCAAGAAGACGCCGACGATTTCATTTTAATGGATTGGGTTTTCTCTTGTTGGACAAACGGCCACATTCTCCGAACCGCCGATCCCAAATTGGGAGGCAATTTCGAACCTTCACAGCTCGAATTGGTTCTCAAACTTGGCTTGCTCTGTTCCCACTACTCCCCCGCCGTTCGCCCCACTATGCACCAGGTTTTGCAGTTTTTGCAGGCCGACGCGCCCCTGCCGGACCTCGCATCGCTCCGGTGGCGCCTCTCTGGAAGTGGGTTTTTCAACTTGAGGCGTCGCGACGGCGATGGCGATGGCGATGGGTTGGATGATTTTACGATGTCTTATCCGTTATCGACGGAAAGGAATGTGACGAGTTCGTCGTCGGTTGCGGAGTCTATTCTGTCGGAAGGCCGCTGA 2043 47.58 MAAIFFLTLFLLIPISLASGDQSFIFNGFNSGDLILDGVAEVTSNGLLKLTNDHDQQIGHAFYPNSISFKSPLNNSSISSFSATFVFAIISEYEDLGGHGIAFVVSPTKGLPGARPSESLGLFNESNNGNERNHIFAVELDTIQNLDLKDINKNHVGININGLVSEKAERAGYWVDGEFRNLTLISGEPMQLWVEYDGFEKQINVTLASIEIRDKPKIPLLSYRRDLSSVINDIMYIGFSSSTGSITTSHYVLAWSFSVNGEAQRLALSQLPNLPSRPEKQRRSKFLTVGLPLISVSVALMTVLGVIYFIYRRRKFAEILEDWEMEYGPQRFKYKDLYRATKGFREKEFLGFGGFGRVYKGVLPNSKIEVAVKKISHESRQGMKEFVAEIVSVGRLRHRNLVALLGYCRRKGELFLVYDYMRNGSLDSYLHELPEITINWEQRFEIIKGVASGLFYLHEQCEKVVIHRDVKASNVLLDDEFNGRLGDFGLAKMYERGADPRTTHVVGTLGYLAPEHIRTGRATTRTDVYAFGAFLLEVACGRRPIHPQEDADDFILMDWVFSCWTNGHILRTADPKLGGNFEPSQLELVLKLGLLCSHYSPAVRPTMHQVLQFLQADAPLPDLASLRWRLSGSGFFNLRRRDGDGDGDGLDDFTMSYPLSTERNVTSSSSVAESILSEGR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12571048 12575756 - Lsi01G014420.1 Lsi01g01442 654100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01442 680 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 7 636 - -
Lsi01g01442 680 Pfam Protein kinase domain 344 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01442 680 SMART serkin_6 344 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01442 680 CDD STKc_IRAK 350 615 - -
Lsi01g01442 680 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246
Lsi01g01442 680 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Lsi01g01442 680 SUPERFAMILY Protein kinase-like (PK-like) 325 621 IPR011009 -
Lsi01g01442 680 Gene3D Transferase(Phosphotransferase) domain 1 421 626 - -
Lsi01g01442 680 ProSitePatterns Protein kinases ATP-binding region signature. 350 374 IPR017441 GO:0005524
Lsi01g01442 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Lsi01g01442 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 278 IPR013320 -
Lsi01g01442 680 PANTHER - 7 636 - -
Lsi01g01442 680 Gene3D - 21 271 - -
Lsi01g01442 680 Pfam Legume lectin domain 22 271 IPR001220 GO:0030246
Lsi01g01442 680 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01442 Lsi03g02126 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01442 Lsi-Chr1:12571048 Lsi03g02130 Lsi-Chr3:32463610 0 dispersed
Lsi01g01442 Lsi-Chr1:12571048 Lsi01g01446 Lsi-Chr1:12591891 4.49E-19 proximal
Lsi03g02039 Lsi-Chr3:31752901 Lsi01g01442 Lsi-Chr1:12571048 5.56E-121 transposed
Lsi01g01442 Lsi-Chr1:12571048 Lsi03g02126 Lsi-Chr3:32450062 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83288 PF00069 Pkinase 2.30E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01442 - - csv:101205439 1166.76