Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01447 ATGAGTGAAGACTCCAACTTAATCTTAGAACAAGCAGCACAGATTGACAACAATGGAGCCTTGGCCTTAACAAACCACTCCCAAAGATTAAAATACGGCCACGCTTTCCATAAATTTCCTTTTCAGTTCAAGAACTCCTCCAATGGTATAGCTTTCTCCTTCTCCACCTCTTTTGGTTTCACCATCATCCCTGAAAGTCCAAATCTCGGCGGCGATGGCTTCACTTTCACCATCGCACCTAAACAGAGCTTTCCAGCTCTTTCCAAAATGTTTCTGGGTCTCCCCAATTTAACCCATGATGGCGACAACTTTTCTAAACATTCCATCGCCGTCGAATTTGATACTTTTAAAGATTCTGAATTCCGAGATATCAACGACAACCACATCGGCGTCGATATCGGCAGTTTCGTTTCGAAAGCCGCCGTTGCCGCTGCATATTTCACTGACGATGGCAAAAGGAAACAGAGTTTGAATTTGAAGGGTGGGAAGTTGATTGTTAAAGTTTGGATTGACTACGATTCGACTCGAAATTCTCTTGATGTCTCAATTTCGCCATTTGATTCAAAACTCATAAGGCCGATTTTGTCGTATAAAGTCGATCTCTCGCCGATTCTAAACAATTCCATGTTCATCGGATTCACTGCTTCCACTGGTATGTTCGGTAGTTCCCATTTGATTTTGGGTTGGAGTTTCAAAATGAACGGCCAAGCTCGAGATCTTGATATTTTTTCTCTTCCTTCACCATTCCATCACTGGTCTACTAAAATCATAGTACGAATCTCTGTTTTATCAGCAATTCTCACGATCTCTGTCATTTCTGTTGCTGTTTATATAATCAAAATAGTCATGGGAATTTCAATTAGGCCCACATCGGTATCCCTACAAAGACCTTCACAAAGCAACGAGAGGATTCAGAGACAAGGAGCTCCTCGGCCATGGCTGATTCGGGAAGGTTTACAGAGGAACTCTTCCAAATTCAAAAACCCAAATCGCAGTCAAGCGAATTTCGAACGAATCAAAACAGGGTATCCGGAATTCGTATCGGAAATCGCTACAATCGGAAAACTCCGTCACAGGAATTTAGTTCAACTCTTGGGATGGTGTCGTCGCCGGAAAGATCTTCTTCTGGTTTACGATTATATGGAGAATGGAAGCTTGGATAAATACATATTCGACAAACCGAAAAGGAATTTGAATTGGGAACAGAGATTCGAAATTATAAAGGGGGTTGCCTCTGCTCTATTTTATCTTCACGAAGGATATGAACAGGTAGTGATTCACAGAGACGTGAAGGCAAGCAATGTGTTATTAGACGGAGATTGGAACGGACGATTGGGGGATTTCGGGCTCGCGAAGTTGTACGAACATGGGTCGTCCCCGGATCGTCGGAACTTTGGGGTATATGGCGCCGGAGCTTACGAGAACAGGGAAATCGATGACGAGGTCGGATGTTTATGCGTTTGGTGGGCTGATGTTGGTAGTGGCGTGTGGGCGGCGGCCGGTGGAGGTGAAGGCGACGCCGGAGGAGATGGTGTTGGTGGATTGGGTGTGTGA 1554 44.47 MSEDSNLILEQAAQIDNNGALALTNHSQRLKYGHAFHKFPFQFKNSSNGIAFSFSTSFGFTIIPESPNLGGDGFTFTIAPKQSFPALSKMFLGLPNLTHDGDNFSKHSIAVEFDTFKDSEFRDINDNHIGVDIGSFVSKAAVAAAYFTDDGKRKQSLNLKGGKLIVKVWIDYDSTRNSLDVSISPFDSKLIRPILSYKVDLSPILNNSMFIGFTASTGMFGSSHLILGWSFKMNGQARDLDIFSLPSPFHHWSTKIIVRISVLSAILTISVISVAVYIIKIVMGISIRPTSVSLQRPSQSNERIQRQGAPRPWLIREGLQRNSSKFKNPNRSQANFERIKTGYPEFVSEIATIGKLRHRNLVQLLGWCRRRKDLLLVYDYMENGSLDKYIFDKPKRNLNWEQRFEIIKGVASALFYLHEGYEQVVIHRDVKASNVLLDGDWNGRLGDFGLAKLYEHGSSPDRRNFGVYGAGAYENREIDDEVGCLCVWWADVGSGVWAAAGGGEGDAGGDGVGGLGV 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12598290 12601185 + Lsi01G014470.1 Lsi01g01447 654105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01447 517 ProSitePatterns Legume lectins beta-chain signature. 109 115 IPR019825 -
Lsi01g01447 517 ProSiteProfiles Protein kinase domain profile. 209 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01447 517 Gene3D Phosphorylase Kinase; domain 1 325 381 - -
Lsi01g01447 517 Pfam Legume lectin domain 3 244 IPR001220 GO:0030246
Lsi01g01447 517 CDD lectin_legume_LecRK_Arcelin_ConA 2 235 IPR001220 GO:0030246
Lsi01g01447 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Lsi01g01447 517 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 5 460 - -
Lsi01g01447 517 SUPERFAMILY Concanavalin A-like lectins/glucanases 4 238 IPR013320 -
Lsi01g01447 517 Pfam Protein tyrosine and serine/threonine kinase 345 457 IPR001245 GO:0004672|GO:0006468
Lsi01g01447 517 SUPERFAMILY Protein kinase-like (PK-like) 342 461 IPR011009 -
Lsi01g01447 517 Gene3D - 1 244 - -
Lsi01g01447 517 SMART serkin_6 255 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01447 517 Gene3D Transferase(Phosphotransferase) domain 1 382 481 - -
Lsi01g01447 517 PANTHER - 5 460 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01447 Lsi03g02127 CCT
Lsi01g01447 Lsi03g02127 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01447 Lsi-Chr1:12598290 Lsi03g02130 Lsi-Chr3:32463610 2.93E-162 dispersed
Lsi01g01446 Lsi-Chr1:12591891 Lsi01g01447 Lsi-Chr1:12598290 1.02E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83290 PF00139 Lectin_legB 7.50E-63 CL0004 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01447 - - mcha:111013719 471.47