Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01453 ATGGAAACCCATCTTCCGCCTTTGTTTTTTCTTCTCATTTTCCTCTCATTCTTCCTCTGCTGTCCGGCCAAGCGCTGCCCAGACTGCGGCCGCACGCCGGTGCCGTACCCACTCAGCACGCGCCCAGATTGCGGCGACCCTCTTTACAGAGTCCGGTGCGCCGCCACCGAGCTCTGGTTCGAGTCCGTCAATGGGTCTTCCTATTTAATCACTTCCGTTAATCCGATTGCCCAGAGGCTGATCGTCCGACCGCCGGGGTTGGCCAAAAACGTATGCGTTTCGTCAGATTTTGGGACAAATGGTTTTTGGCTCGACACGCGCCTTCCTTTCACCATTTCCGATAGAAATACGGTTTTGCTCTACAACTGTTCGATAGAAGTCCTCGAAAATAATTGGACCTGTTCACCTAATAGCGTCTGTCATGACTTTATCAGACAGAATCCAGTGGCAATGGCAGCGTGTAAGGCGGCGCCGACGTGCTGTTGGTACACGAGTGGCGGTTCCATGGCTGCATATAGAATCAGGGTGCGAAAGGAGCGGTGTTCGGCTTATGAATGTTTTGTGAATTTGGGTGGTTCTGTTCCGGCGAAGAAGTGGCCGGAACCTGGATTGGAGATTCAATGGGCATCACCGCGGGAGCCGCCATGTCGTGTGGCTACGGATTGCCGGAATTGGGCAAATTCTGCTTGTTTGCCGGACCCTGCAAACGCCAAGCAGAGGAGGTGCTTATGCAAAGTGCCTTTCAAGTGGGATCCTGTAAATGGCTTGTGTAATGGCAACAATTTGAAAATACAGAACAAGATTACTCACAAGAAGCACAAGAAGATGCCTGTTATTCTTGGAGGAGCAATGGCGGGAGTATTTATTATGGTGATTGGAGGTTCAATCATGTTTATAACTTCCAAAAGACGTCGACAGATTCCGAAAGGGAACGAGCTGAGTTCGAAACAAGTTCGTGAAGTGATTCTAACTGCCAACAGCAGTGGCAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCCACAAACAACTTCTCCAAAGAGAACTTGCTTGGCTCTGGTGGCTATGGAGAGGTCTTCAAAGGCAACCTAGAAGATGGAACTTTAATAGCTGTTAAACGTGCCAAGTTGGGTAGCATGAAGGGCATTGATCAAATCCTGAACGAGGTTCGGATTCTTTGTCAGGTGAACCATCGGTACCTCGTTCGTCTACTCGGATGTTGTCTCGAACTCGAGCAACCCCTTTTAATATATGAGTACATCTCGAATGGGAACTTATTTGATCACCTTCATGGGACTACAAGTTCAATCAAATGGCCACCATTGACATTGAGTCGTCGACTTCACATTGCTCGGCAAACAGCCGAGGGCCTTGCTTATCTCCACACTTCAGCCATGCCGAGAATCTATCATCGAGACATAAAGTCGAGCAACATTCTACTAGACGAGAAGATGAATGCTAAAGTAGCTGATTTCGGGCTGTCTAGATTGGCTATAACTGAATCAAGCCATATAACAACTGGGGCTCAGGGAACATTAGGTTATCTAGACCCAGAATATTACCTTAACTTCCAATTGACAGACAAGAGTGATGTTTACAGTTTTGGAGTTGTCATGTTGGAGCTATTGACTTCTGAGAAAGCCATTGATTTTAATAGGGAAGAGGAAGATGTAAATTTAGTAGTTTATATCAAGAAGATTATCCAAGAAGACAGATTGCTGGAGGTTGTTGATCCTGTGGTTAAACATAGAGCAAGCAGAGTTGAAATGGAGATAATCAAGGCATTAGGGTCTTTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAATAGACCTGCCATGAAAGAAGTTGCTGATGAGCTAGACAACATTATTTCCATTCTTAACAATGAGGTTAGAAATATTGACTAA 1917 46.32 METHLPPLFFLLIFLSFFLCCPAKRCPDCGRTPVPYPLSTRPDCGDPLYRVRCAATELWFESVNGSSYLITSVNPIAQRLIVRPPGLAKNVCVSSDFGTNGFWLDTRLPFTISDRNTVLLYNCSIEVLENNWTCSPNSVCHDFIRQNPVAMAACKAAPTCCWYTSGGSMAAYRIRVRKERCSAYECFVNLGGSVPAKKWPEPGLEIQWASPREPPCRVATDCRNWANSACLPDPANAKQRRCLCKVPFKWDPVNGLCNGNNLKIQNKITHKKHKKMPVILGGAMAGVFIMVIGGSIMFITSKRRRQIPKGNELSSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGNLEDGTLIAVKRAKLGSMKGIDQILNEVRILCQVNHRYLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGTTSSIKWPPLTLSRRLHIARQTAEGLAYLHTSAMPRIYHRDIKSSNILLDEKMNAKVADFGLSRLAITESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIQEDRLLEVVDPVVKHRASRVEMEIIKALGSLAAACLDEKRQNRPAMKEVADELDNIISILNNEVRNID 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12657490 12659593 + Lsi01G014520.1 Lsi01g01453 654111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01453 638 CDD STKc_IRAK 353 626 - -
Lsi01g01453 638 SMART serkin_6 347 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01453 638 Gene3D Transferase(Phosphotransferase) domain 1 423 636 - -
Lsi01g01453 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 25 629 - -
Lsi01g01453 638 Pfam Protein tyrosine and serine/threonine kinase 350 623 IPR001245 GO:0004672|GO:0006468
Lsi01g01453 638 Gene3D Phosphorylase Kinase; domain 1 309 422 - -
Lsi01g01453 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 629 IPR045274 GO:0007166
Lsi01g01453 638 ProSiteProfiles Protein kinase domain profile. 347 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01453 638 SUPERFAMILY Protein kinase-like (PK-like) 330 623 IPR011009 -
Lsi01g01453 638 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Lsi01g01453 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01453 Lsi-Chr1:12657490 Lsi08g00485 Lsi-Chr8:12691808 1.12E-91 dispersed
Lsi08g01427 Lsi-Chr8:22501332 Lsi01g01453 Lsi-Chr1:12657490 6.81E-85 dispersed
Lsi03g00355 Lsi-Chr3:4205094 Lsi01g01453 Lsi-Chr1:12657490 0 transposed
Lsi03g01956 Lsi-Chr3:30959868 Lsi01g01453 Lsi-Chr1:12657490 6.04E-178 transposed
Lsi11g00611 Lsi-Chr11:6513770 Lsi01g01453 Lsi-Chr1:12657490 1.68E-34 transposed
Lsi01g01453 Lsi-Chr1:12657490 Lsi10g01414 Lsi-Chr10:18229898 1.81E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83291 PF07714 PK_Tyr_Ser-Thr 2.00E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01453 - - csv:101204219 1182.93