Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01465 ATGGCTTTGTGCCGCATAAATCTTCTTCACCGGTGTTCTCCCGGAACGCCGCGCCTCGGCCCCACTTCTTCCCTCCAAAACCCTAATCCTTTTCCTCAATTACTTCCACCTTTTCCATCTACTATTCTCAATTCCAATAAGTTATCCTCTTCCAGAGTCCGCCACCGCAGCTTTATTTCCATGAATGCTCACATGGCGATGGAAGCGAAGCCTGTTTCAGAGGATAGAATGCTCGTGTATGTTCCGCCTCATCCGTTGATCAAGCACTGGGTTTCAATTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAATGCAATGGCAGAGCTAGGGAGGCTACTTATTTATGAAGCTTCAAGGGATTGGTTGTTCTGCTTCTATCCACATCAGCCTACTGTAAAGGGAGAGATACAGTCACCCATGGGTGTTGCTTCAATTGAGTTTGTTGATCCAAGAGAGCCTGTGGCGATAATTCCCATCCTCAGAGCTGGTCTAGCTCTTGCAGAATATGCATCATCTGTATTGCCTGCAACAAAATTGTATCATCTTGGTAAGGGAAGTAAGATAATGCAGACTGCGGAGTGTGATGTTCTGAACAGAAATGATATTCATGCGAAGACTTACGTGTTGTTACCTGAAAGTTTTCCTGAAGGTTGTAGAATCTTTGTGGTCGATCCCATGCTTGCAACCGGTGGCACAATAGTGGCAGCTCTTGATCTCCTAAAGGAACGTGGAATTGGCAACAAACAAATAAAAGTGGTACTGGAATTGGCGGATCTTTTGCTTTTGTCATGTTTCTGGGATGTAGTAACTATCGTAAATGTGACTGGTGTGCACACAAAAATCAATACGTCACGGGTTTGCACTGCAGCTGCAGTCCCCAAGGAATATTATATATCTGCTGTTGCTGCCCCTCCCGCCCTTCAGAAGCTCAGCGAGAAGTTTCCTGGGCTACATGTATACACTGGAATTATTGACTCGACAGTTAATGACAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGCGATCGCAGCTTCGGCACCTGA 1053 45.3 MALCRINLLHRCSPGTPRLGPTSSLQNPNPFPQLLPPFPSTILNSNKLSSSRVRHRSFISMNAHMAMEAKPVSEDRMLVYVPPHPLIKHWVSILRNEQTPCPIFKNAMAELGRLLIYEASRDWLFCFYPHQPTVKGEIQSPMGVASIEFVDPREPVAIIPILRAGLALAEYASSVLPATKLYHLGKGSKIMQTAECDVLNRNDIHAKTYVLLPESFPEGCRIFVVDPMLATGGTIVAALDLLKERGIGNKQIKVVLELADLLLLSCFWDVVTIVNVTGVHTKINTSRVCTAAAVPKEYYISAVAAPPALQKLSEKFPGLHVYTGIIDSTVNDKGFIIPGLGDAGDRSFGT 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12754578 12758629 + Lsi01G014650.1 Lsi01g01465 654123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01465 350 CDD PRTases_typeI 151 255 IPR000836 -
Lsi01g01465 350 SUPERFAMILY PRTase-like 79 256 IPR029057 -
Lsi01g01465 350 Gene3D - 277 350 IPR029057 -
Lsi01g01465 350 Pfam Uracil phosphoribosyltransferase 299 350 - -
Lsi01g01465 350 Pfam Uracil phosphoribosyltransferase 81 256 - -
Lsi01g01465 350 SUPERFAMILY PRTase-like 292 349 IPR029057 -
Lsi01g01465 350 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 300 346 - -
Lsi01g01465 350 Gene3D - 77 261 IPR029057 -
Lsi01g01465 350 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 34 258 - -
Lsi01g01465 350 PANTHER URIDINE KINASE 300 346 - -
Lsi01g01465 350 PANTHER URIDINE KINASE 34 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01465 K00761 upp, UPRT; uracil phosphoribosyltransferase [EC:2.4.2.9] - csv:101209447 441.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01465 Lsi-Chr1:12754578 Lsi05g00389 Lsi-Chr5:4921656 6.15E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi10g00425 . 71 555 PRT Gene Family AT2G16570 85.2 1.6e-242 835.5
Lsi10g00425 . 71 555 PRT Gene Family AT4G34740 86.2 1.5e-243 839.0
Lsi10g00425 . 28 528 PRT Gene Family AT4G38880 70.9 9.5e-200 693.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi09g00406 . 6 104 PRT Gene Family AT4G22570 82.8 5.0e-44 173.7
Lsi07g01320 . 1 95 PRT Gene Family AT4G22570 87.5 1.1e-43 172.6
Lsi08g01520 . 83 174 PRT Gene Family AT4G22570 82.6 4.4e-40 160.6
Lsi08g01213 . 11 100 PRT Gene Family AT4G22570 78.9 2.0e-37 151.8
Lsi09g00406 . 1 96 PRT Gene Family AT4G12440 84.4 8.1e-41 162.9
Lsi07g01320 . 1 95 PRT Gene Family AT4G12440 85.3 2.4e-40 161.4
Lsi08g01520 . 78 173 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Lsi08g01213 . 4 99 PRT Gene Family AT4G12440 78.1 3.2e-37 151.0
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g00585 . 1 190 PRT Gene Family AT1G71750 64.2 1.9e-68 255.8
Lsi02g01799 . 15 467 PRT Gene Family AT1G55810 85.2 1.2e-224 775.8
Lsi05g00389 . 10 414 PRT Gene Family AT1G55810 67.6 1.3e-162 569.7
Lsi02g01799 . 64 479 PRT Gene Family AT3G27440 75.5 1.2e-184 642.9
Lsi05g00389 . 30 414 PRT Gene Family AT3G27440 64.5 9.5e-147 516.9
Lsi02g01799 . 11 466 PRT Gene Family AT3G27190 74.9 3.6e-206 714.5
Lsi05g00389 . 4 414 PRT Gene Family AT3G27190 75.7 4.3e-191 664.5
Lsi01g01465 . 4 350 PRT Gene Family AT3G53900 52.1 2.3e-86 315.8
Lsi02g01799 . 1 467 PRT Gene Family AT4G26510 83.9 1.7e-229 792.0
Lsi05g00389 . 3 414 PRT Gene Family AT4G26510 68.6 8.1e-171 597.0
Lsi02g01799 . 11 469 PRT Gene Family AT5G40870 73.8 6.8e-205 710.3
Lsi05g00389 . 4 414 PRT Gene Family AT5G40870 77.1 4.6e-193 671.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01465 Lsi_Chr01 FPKM 0.631447 0.712163 2.134458 2.872586 4.573893 3.987784 4.511197 3.196368 2.811725 3.67239