Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01477 ATGGGGGAGGGTTTTGAAGTTTACCATGTCCCACAACAAAGCAGGAGAGACAAGCTAAGAGTTGGAATTGGAATTGGTAGTAGTAATTCTACTAATCATCATAATAATTTCTTCCCTTTATATGACGATCCCTCTTCTTTTATTTCTTCCGATTTTGATTTTCATCAAAACCCCTCTTTTCAAATTTATCATCATAATTATAATTACCCTCCTACCTCCGCCACCGCCTCCGCCGCCCTCCCTCCGCTCTTCTCCGACCAACAACAACCACCCTTGTCCCTTGACCTCAACCTTCAACACCGCTACGCCTATCATTCTACTTTACCACTTCTTGGCTACTCGGCTTCCGTTTTAAAAGCCTCCAAATTTTTTAAGCCAGCTCAGCAACTCCTCCATGACCTATTTGATTACGCCGCCCCTAACTCCTCCGACAAGTTGCTGCCGGATTCCGCCCTTCTTGACAACTTGGAGGCTGATATTCCCACCGCCGATGATGGAGTTGAAACCCACGCGACAAAATCTAGGCTTATTACCATGCTCCACGAGGTTTATAGAAGATATAAACTATACTATCAGCAAATGCAAGCAGTGGTTACAACATTTGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAAATTCTTAAAAAATGCCATAGCCGACCAGCTCCAATTCAACAAGCAGCAGCTGCCGCCGTCTTACAATTACCCATATTCTCAAAGATCCATTCACAACCACGGTGCCGGATTCGTCGATCACCAACCCGTTTGGCGCCCGCAGCGAGGTCTCCCCGAGAGTGCCATCACCGTCCTCCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACTGGACTCTCGAGAAGTCAGGTGTGTTTAGAGTAA 960 46.77 MGEGFEVYHVPQQSRRDKLRVGIGIGSSNSTNHHNNFFPLYDDPSSFISSDFDFHQNPSFQIYHHNYNYPPTSATASAALPPLFSDQQQPPLSLDLNLQHRYAYHSTLPLLGYSASVLKASKFFKPAQQLLHDLFDYAAPNSSDKLLPDSALLDNLEADIPTADDGVETHATKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAVKAMFKHFKFLKNAIADQLQFNKQQLPPSYNYPYSQRSIHNHGAGFVDHQPVWRPQRGLPESAITVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVCLE 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12841800 12845522 - Lsi01G014770.1 Lsi01g01477 654135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01477 319 SUPERFAMILY Homeodomain-like 264 317 IPR009057 -
Lsi01g01477 319 Pfam Homeobox KN domain 287 317 IPR008422 GO:0003677|GO:0006355
Lsi01g01477 319 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 68 316 - -
Lsi01g01477 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 316 - -
Lsi01g01477 319 Pfam Associated with HOX 117 233 IPR006563 -
Lsi01g01477 319 Gene3D - 276 318 - -
Lsi01g01477 319 CDD homeodomain 270 316 IPR001356 GO:0003677
Lsi01g01477 319 SMART prehox3 111 234 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01477 Lsi03g02150 CCT
Lsi01g01477 Lsi03g02150 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01477 Lsi-Chr1:12841800 Lsi03g00020 Lsi-Chr3:394554 1.76E-49 dispersed
Lsi01g01477 Lsi-Chr1:12841800 Lsi03g02150 Lsi-Chr3:32633290 8.12E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01477 - - csv:101221147 474.167