Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01486 ATGACGGAACAAGTACTGCAGGTGTTTGGTTTCAGGTTAAGTCCGTTCAGTCGGCGAGTGGAGTTAGCTCTCAAACTCAAAGGCCTACGCTACCAATATGTTGAGGAAGACTTGAAGAATAAGAGCCAATTGCTTCTGAAATACAATCCAATTTACAAGAAGGTCCCTGTGTTCGTTCACAATGGAAACTCCATTGCAGAGTCTCTTGTCATCCTTGAATACATTGATGAAATTTGGAAAACCAATCCTATCTTGCCCCAACATCCACAAGAAAGAGCTCAGCAAGATTTCTGGCCAAGTATATTGATGACAAGGAAAGCTATTAGAAGTCAAAGAGAAGGGAGAGAGAAGGTTGTGGTCGTGAAGGCTGTGGAAGAAGCATGCAAGGCATTGGAAGCAGTTGAGAATGAGCTTAAAGGAAACAATAAATTCTTTGGAGGAGACAGCATTGGGTTAGTGGACATTGTAGGCATCTTTATTGGCTATTGGGTTCCTATCATGCAAACAGCTCTTGGCTTTGAGATTCTTAGCACCCACAGGTTCCCTAAACTAAGCAAATGGAGTGAAGAACTTATGAGCCATAGCGTTGTCAAGGAGATTCTGCCTCCAAAATATGACCTTTTTGCTTATACTCCATTTTCGAATTACCAAAAATGTTGGTTCTAA 666 41.59 MTEQVLQVFGFRLSPFSRRVELALKLKGLRYQYVEEDLKNKSQLLLKYNPIYKKVPVFVHNGNSIAESLVILEYIDEIWKTNPILPQHPQERAQQDFWPSILMTRKAIRSQREGREKVVVVKAVEEACKALEAVENELKGNNKFFGGDSIGLVDIVGIFIGYWVPIMQTALGFEILSTHRFPKLSKWSEELMSHSVVKEILPPKYDLFAYTPFSNYQKCWF 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12950244 12953018 + Lsi01G014860.1 Lsi01g01486 654144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01486 221 SUPERFAMILY Thioredoxin-like 7 101 IPR036249 -
Lsi01g01486 221 SUPERFAMILY GST C-terminal domain-like 77 205 IPR036282 -
Lsi01g01486 221 Gene3D - 85 218 - -
Lsi01g01486 221 SFLD Main (cytGST) 3 210 - -
Lsi01g01486 221 Gene3D Glutaredoxin 1 84 - -
Lsi01g01486 221 CDD GST_N_Tau 6 79 - -
Lsi01g01486 221 CDD GST_C_Tau 89 210 IPR045074 GO:0004364|GO:0006749
Lsi01g01486 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 213 IPR010987 -
Lsi01g01486 221 SFLD Main.3: Omega- and Tau-like 3 210 IPR045073 -
Lsi01g01486 221 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Lsi01g01486 221 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 6 213 - -
Lsi01g01486 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 213 IPR045073 -
Lsi01g01486 221 Coils Coil 121 141 - -
Lsi01g01486 221 Pfam Glutathione S-transferase, C-terminal domain 98 194 IPR004046 -
Lsi01g01486 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01486 Lsi-Chr1:12950244 Lsi01g01490 Lsi-Chr1:12986980 2.66E-75 dispersed
Lsi01g01486 Lsi-Chr1:12950244 Lsi01g01487 Lsi-Chr1:12961182 6.15E-134 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01486 K00799 - csv:101213782 231.106