Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01487 ATGACGGAACAAGTACTGCAGGTGTTTGGTTTCAGGTTAAGTCCGTTCAGTCGGCGAGTGGAGTTGGCTCTCAAACTCAAAGGCCTACGCTACCAATATGTTGAGGAGGACGTGAAGAATAAGAGTCAATTGCTTCTGAAATACAATCCAAGTTACAAGAAGGTCCCTGTGTTGGTTCACAATGGAAACCCCATTGCAGAGTCTCTTGTCATCCTCGAATACATTGATGAAATTTGGAAAACCAACCCTATCCTGCCCCAACATCCCCATCAAAGAGCTCAAGCAAGATTTCTGGCCAAGTATATTGATGACAAGTTTTTTGGTGCATGGAGGAAAGCTATTAGAAGTCAAAGAGAAGGAAGAGAGAAGGTTGTGGAGGCTGTGGAAGAAGCATGCAAGGCATTGGAAGCAGTTGAGAATGAGCTTAAAAGCAACAATAAGTACTTTGGAGGAGACAGCATTGGGTTAGTGGACATTGTAGGCATCTTTATTGGCTATTGGGTTCCTATCATGCAAACAGCTCTTGGCTTTGAAATTCTTAGCAGCCACAGGTTCCCAAAACTAAGCAAATGGAGTGAAGAGCTTATGAGCCATAGCGTTGTCAAGGAGATTCTGCCTCCAACATATGACCTTTTTGCTTATACTCAAACTCATTTTCTAATTACCAAAACTGTGGGTTCTAAGCTGTGA 690 42.9 MTEQVLQVFGFRLSPFSRRVELALKLKGLRYQYVEEDVKNKSQLLLKYNPSYKKVPVLVHNGNPIAESLVILEYIDEIWKTNPILPQHPHQRAQARFLAKYIDDKFFGAWRKAIRSQREGREKVVEAVEEACKALEAVENELKSNNKYFGGDSIGLVDIVGIFIGYWVPIMQTALGFEILSSHRFPKLSKWSEELMSHSVVKEILPPTYDLFAYTQTHFLITKTVGSKL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12961182 12963611 + Lsi01G014870.1 Lsi01g01487 654145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01487 229 SFLD Glutathione Transferase (cytosolic) 3 218 IPR040079 -
Lsi01g01487 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 219 IPR010987 -
Lsi01g01487 229 CDD GST_C_Tau 89 214 IPR045074 GO:0004364|GO:0006749
Lsi01g01487 229 SUPERFAMILY Thioredoxin-like 7 107 IPR036249 -
Lsi01g01487 229 SFLD Main.3: Omega- and Tau-like 3 218 IPR045073 -
Lsi01g01487 229 SUPERFAMILY GST C-terminal domain-like 77 216 IPR036282 -
Lsi01g01487 229 Coils Coil 121 145 - -
Lsi01g01487 229 CDD GST_N_Tau 6 79 - -
Lsi01g01487 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Lsi01g01487 229 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Lsi01g01487 229 Pfam Glutathione S-transferase, C-terminal domain 113 198 IPR004046 -
Lsi01g01487 229 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 6 220 - -
Lsi01g01487 229 Gene3D - 85 223 - -
Lsi01g01487 229 Gene3D Glutaredoxin 1 84 - -
Lsi01g01487 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 220 IPR045073 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01487 Lsi-Chr1:12961182 Lsi01g01490 Lsi-Chr1:12986980 3.83E-82 dispersed
Lsi03g02066 Lsi-Chr3:31980418 Lsi01g01487 Lsi-Chr1:12961182 1.54E-11 dispersed
Lsi01g01486 Lsi-Chr1:12950244 Lsi01g01487 Lsi-Chr1:12961182 6.15E-134 tandem
Lsi01g01487 Lsi-Chr1:12961182 Lsi01g01488 Lsi-Chr1:12966936 9.55E-53 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01487 K00799 - csv:101213782 249.98