Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01489 ATGGAAGAAAAAGTGGAGGTGTTTGGGGCATGGTTCAGCCCTTTCAGCCGCCGAGTTGAATTGGCTTTGAAGCTTAAAGGCATTGAATATGATTACATTGAAGAAGAAGTATACAATAAGAAGAGCGATTTGTTACTCAAATTTAACCCTGTTTACAAGAAGGTTCCTGTTTTCGTCCATGGCGGAAAACCCATTGCAGAGTCCATTGTTATTCTTCAGTACATAGAAGAGACTTGGAAGGATAATCCCATTTTGCCTCAACATCCTTATCACAAAGCTCTTGCACTCTTTTGGGCCAAGTTCTTGGATGACAAGCTTCTAGGTGCAATAATCAAAGTAAGGAGAAGGGAAGGAAAGGAGAAAGAAGAGGCAATAGCAGAGGCATGTGAAGCATTGAAAGCACTAGAAGATGAGCTGAAAGGGAAGAGATTCTTTGGAGGAGAGACATTGGGATTTGTTGACATTGTTGCCAACTTTGTAGCTTATTGGATTCCAGCCATTGAAGAAGCTTTTGGTCTTGATGGTGCGTTGACCACTGAAATGGAGAAGCTTCCAAACCTACGACGATGGTGCAATGAGTTTGTAGAACACACCATGGTCAAACACACTCTGCCTCCAAAACAACACCTCCTTGCCTTCATGAGATCTCAGTTTGGAACCAATAATGTTGCTTCCAAATGA 681 42.14 MEEKVEVFGAWFSPFSRRVELALKLKGIEYDYIEEEVYNKKSDLLLKFNPVYKKVPVFVHGGKPIAESIVILQYIEETWKDNPILPQHPYHKALALFWAKFLDDKLLGAIIKVRRREGKEKEEAIAEACEALKALEDELKGKRFFGGETLGFVDIVANFVAYWIPAIEEAFGLDGALTTEMEKLPNLRRWCNEFVEHTMVKHTLPPKQHLLAFMRSQFGTNNVASK 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12980972 12982855 + Lsi01G014890.1 Lsi01g01489 654147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01489 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Lsi01g01489 226 Coils Coil 118 138 - -
Lsi01g01489 226 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 218 IPR045073 -
Lsi01g01489 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 218 IPR010987 -
Lsi01g01489 226 Gene3D - 85 223 - -
Lsi01g01489 226 SFLD Main (cytGST) 2 218 - -
Lsi01g01489 226 SUPERFAMILY GST C-terminal domain-like 77 218 IPR036282 -
Lsi01g01489 226 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Lsi01g01489 226 PANTHER GLUTATHIONE S-TRANSFERASE U8 1 218 - -
Lsi01g01489 226 CDD GST_C_Tau 89 215 IPR045074 GO:0004364|GO:0006749
Lsi01g01489 226 SUPERFAMILY Thioredoxin-like 4 106 IPR036249 -
Lsi01g01489 226 SFLD Main.3: Omega- and Tau-like 2 218 IPR045073 -
Lsi01g01489 226 CDD GST_N_Tau 5 79 - -
Lsi01g01489 226 Pfam Glutathione S-transferase, C-terminal domain 115 196 IPR004046 -
Lsi01g01489 226 Gene3D Glutaredoxin 1 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01489 Lsi-Chr1:12980972 Lsi01g01498 Lsi-Chr1:13061913 8.49E-128 dispersed
Lsi01g01488 Lsi-Chr1:12966936 Lsi01g01489 Lsi-Chr1:12980972 1.38E-44 tandem
Lsi01g01489 Lsi-Chr1:12980972 Lsi01g01490 Lsi-Chr1:12986980 3.59E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01489 K00799 - csv:101214027 318.546