Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01490 ATGGGAGAAGAAGAAGTGCAGGTGTTTGGTTTCCGGTCAGGTCCGTTCAGTTTGAGAGTGGAATTGGCTCTTAAATTCAAAGGCGTTCATTACCAACACATTGACGAAGATTTGCTCAACAATAAGAGCGATTTGCTGTTGAAATACAACCCAATTTACAAGAAGGTTCCTGTTCTAGTCCACCATGGAAAATCTATTTCAGAGTCTCTTGTAATCCTCGAATACATCGAAGAAACCTGGCCAGAAAATTATGCCATCTTGCCCCAAGATCCCTATCAAAGAGCTCTTGCCAGATTCTGGGCTAAGTATATTGATGACAAGGTTGTTCCAGCGGTACAGAAAGCTTTTAGAAGCAAAGAAGTAGAAGAGAGAGAGAAGAGTATAGAAGAAGCACAGAAGACGCTGGAACCACTTGAGGAAGAACTTAAAAACAAATTGTTTTTTGGAGGAGAAAAAATTGGATTTGTGGACATTGTAGGCCTCATTTTAGCTTGCTGGATTCCTGCCACTGAAGAAGCTGTAGGCTTTGAGCTGCTATCAGCCCACAAGTTTCCAAATCTAACCAAATGGACTCAACATTTTGTGAATCACAGCGTTGCAAAGGAAGTTTTGCCTAAAAAAGATGCTCTTGTTGCCTTCTTGAAGAATGTTGTGTTTGCTCCAAAGAACTAA 672 40.92 MGEEEVQVFGFRSGPFSLRVELALKFKGVHYQHIDEDLLNNKSDLLLKYNPIYKKVPVLVHHGKSISESLVILEYIEETWPENYAILPQDPYQRALARFWAKYIDDKVVPAVQKAFRSKEVEEREKSIEEAQKTLEPLEEELKNKLFFGGEKIGFVDIVGLILACWIPATEEAVGFELLSAHKFPNLTKWTQHFVNHSVAKEVLPKKDALVAFLKNVVFAPKN 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12986980 12988226 + Lsi01G014900.1 Lsi01g01490 654148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01490 223 Pfam Glutathione S-transferase, C-terminal domain 99 196 IPR004046 -
Lsi01g01490 223 CDD GST_N_Tau 6 80 - -
Lsi01g01490 223 SUPERFAMILY GST C-terminal domain-like 78 216 IPR036282 -
Lsi01g01490 223 CDD GST_C_Tau 91 215 IPR045074 GO:0004364|GO:0006749
Lsi01g01490 223 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 3 217 - -
Lsi01g01490 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 213 IPR010987 -
Lsi01g01490 223 Gene3D Glutaredoxin 1 89 - -
Lsi01g01490 223 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Lsi01g01490 223 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Lsi01g01490 223 Gene3D - 90 220 - -
Lsi01g01490 223 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Lsi01g01490 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 3 217 IPR045073 -
Lsi01g01490 223 SFLD Main (cytGST) 2 216 - -
Lsi01g01490 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Lsi01g01490 223 Coils Coil 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01486 Lsi-Chr1:12950244 Lsi01g01490 Lsi-Chr1:12986980 2.66E-75 dispersed
Lsi01g01487 Lsi-Chr1:12961182 Lsi01g01490 Lsi-Chr1:12986980 3.83E-82 dispersed
Lsi01g01490 Lsi-Chr1:12986980 Lsi10g01022 Lsi-Chr10:14497875 1.34E-87 dispersed
Lsi06g01302 Lsi-Chr6:23562948 Lsi01g01490 Lsi-Chr1:12986980 5.39E-61 dispersed
Lsi09g00896 Lsi-Chr9:10669069 Lsi01g01490 Lsi-Chr1:12986980 2.14E-50 dispersed
Lsi01g01489 Lsi-Chr1:12980972 Lsi01g01490 Lsi-Chr1:12986980 3.59E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01490 K00799 - csv:101215228 358.221