Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01498 ATGGGAGAAAAAGTGGAGGTGTTTGGGGCATGGTTCAGCCCTTTCAGCCGCCGAGTTGAATTGACTTTGAAGCTGAAAGGCATTGAATATGATTATATTGAAGAAGAAGTATACAATAAAAAGAGCGATTTGTTACTCAAATTCAACCCTGTTTATAAGAAGGTCCCTGTGTTCGTCCATGGCGGAAAACCCATTGCAGAGTCCATTTTTATTCTTCAATACATAGAAGAGACTTGGAAGGATAACCCTATTTTGCCTAAAGACCCTTATCACAAAGCTCTTGCACTCTTTTGGGCCAAGTTCTTGGATCACAAGCTGCTGCCTGCATTAATCAAAGCAAGAAGATCAAGTGAGGGAAAAGAGAGAAAAGAGGCAATAGCAGAGGCAGGGAAAGCATTAAGAGCGCTAGAAGAAGAGCTTAAAGGGAAGAAATTCTTTGGAGGAGAAACATTGGGATTTGTTGACATTGTTGCTAATTTCATAGCATATTGGAGTCCAGCCATGGAAGAAGCTTTGGGTGTTCAAATACTTACCACTCACTTGCAACACCTTCCAAGGCTAAGTCAATGGTGCCATCACTTTCTTCAACATCCCATTGTCAAACACAATCTGCCCCCCAAAACTCAACTCCTTTCTTTCTTTAACTCACAGTTTGGACCCAATAATAATCTTCCTTCCAAATGA 684 41.08 MGEKVEVFGAWFSPFSRRVELTLKLKGIEYDYIEEEVYNKKSDLLLKFNPVYKKVPVFVHGGKPIAESIFILQYIEETWKDNPILPKDPYHKALALFWAKFLDHKLLPALIKARRSSEGKERKEAIAEAGKALRALEEELKGKKFFGGETLGFVDIVANFIAYWSPAMEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPNNNLPSK 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13061913 13064084 - Lsi01G014980.1 Lsi01g01498 654156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01498 227 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Lsi01g01498 227 Gene3D Glutaredoxin 1 84 - -
Lsi01g01498 227 PANTHER GLUTATHIONE S-TRANSFERASE U8 1 217 - -
Lsi01g01498 227 SFLD Main (cytGST) 2 216 - -
Lsi01g01498 227 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Lsi01g01498 227 SUPERFAMILY Thioredoxin-like 4 107 IPR036249 -
Lsi01g01498 227 Pfam Glutathione S-transferase, C-terminal domain 108 198 IPR004046 -
Lsi01g01498 227 SUPERFAMILY GST C-terminal domain-like 77 216 IPR036282 -
Lsi01g01498 227 CDD GST_C_Tau 89 215 IPR045074 GO:0004364|GO:0006749
Lsi01g01498 227 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Lsi01g01498 227 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 218 IPR010987 -
Lsi01g01498 227 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 217 IPR045073 -
Lsi01g01498 227 Gene3D - 85 221 - -
Lsi01g01498 227 CDD GST_N_Tau 5 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01489 Lsi-Chr1:12980972 Lsi01g01498 Lsi-Chr1:13061913 8.49E-128 dispersed
Lsi01g01498 Lsi-Chr1:13061913 Lsi01g01501 Lsi-Chr1:13090525 1.80E-76 dispersed
Lsi01g01498 Lsi-Chr1:13061913 Lsi01g01499 Lsi-Chr1:13066012 5.37E-59 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01498 K00799 - csv:101214027 392.119