Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01511 ATGGCAGCTTTAGAGACGGCCGGAGCGGATTTGGAGAAAGGGTGGCGGCAGACGGCGGCGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGAAGGTGAATTTGGAGAGGGATTGTAGGATTTGCCATTTGGGATTAGAAAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCTCATAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAACTTGAACAAATGGAGCAACCCCATGAGTCAAACAATGGGACGGTATCAATGGCCATGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGCGGTGGCCGGAACTTTTGGCATGTTCATCGAGTCCTCAATTTTCTTCTTGTTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTCCATTTCAATATGCCATCATAA 501 45.91 MAALETAGADLEKGWRQTAAAERGSGVGEVKKVNLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHELEQMEQPHESNNGTVSMAMVAASVAAAPSGGRNFWHVHRVLNFLLVCMVFAFVISWLFHFNMPS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13172600 13174572 - Lsi01G015110.1 Lsi01g01511 654169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01511 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 100 IPR013083 -
Lsi01g01511 166 PANTHER ZINC FINGER, RING-CH-TYPE 25 166 - -
Lsi01g01511 166 SUPERFAMILY RING/U-box 36 94 - -
Lsi01g01511 166 Pfam RING-variant domain 39 90 IPR011016 GO:0008270
Lsi01g01511 166 SMART ringv_2 38 91 IPR011016 GO:0008270
Lsi01g01511 166 PANTHER OS01G0850200 PROTEIN 25 166 - -
Lsi01g01511 166 ProSiteProfiles Zinc finger RING-CH-type profile. 31 97 IPR011016 GO:0008270
Lsi01g01511 166 CDD RING_CH-C4HC3_MARCH 39 91 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01511 Lsi03g02162 CCT
Lsi01g01511 Lsi03g02162 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01511 Lsi-Chr1:13172600 Lsi02g01315 Lsi-Chr2:17603512 1.10E-34 dispersed
Lsi01g01511 Lsi-Chr1:13172600 Lsi03g02162 Lsi-Chr3:32751721 2.39E-64 wgd
Lsi01g01511 Lsi-Chr1:13172600 Lsi03g00338 Lsi-Chr3:4021559 3.18E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01511 - - mcha:111019441 232.646