Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01523 ATGATCGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACACATAGAGACTGCTGTCAGTATAGCAAGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAAAGAGATCGCTCTCTCGAGAGACCAGTGCATGATTACCAACAACCTGCTCGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAGCAGGCTTCCTCCAGGTTGGTTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGCATGATTCCTTCCAAGGTTCCTCTGGGTGAATCCTTCAATGATTGTATAACACCTGATTATTTTGAACTAAATTTTCAGCTCGGTTTGGTGATTGATTTGACAAATTCTTATCGTTATTATACAACATCAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGGTGAGTCTTGGAATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATATGTTCGTTTACGAGGTCATTCAGTTCCTTTCTCGTCAGAAACACTCGAAGAAGTATATTCTTGTCCATTGTACGCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCACTGTCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTACGTTGATGCTTTATATGCCTTTTACCATGAAAGAAAACCTGAAGCAGTTGTTTGCCCATCCACGCCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAATGGTGAAGCAGTTCCAGACGATGACGATGATGGAGGTCCTGCTGCTCCTTTGAATGAAAATCATGACGATGGTGCGCAGGTGATGACAAATGATGATATTTTGGGTGATGAGATACCTGAGGACCAAGAGCGTGCTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATGCTGGAGCAAGAGCAAATTTGCAATTTCCAGGGTCACATCCAGTGTCTCTTAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATATATGATGCTAATTACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTCGAAGAGTCCAAATGAGATTTCCGTACAGAAATTCAAATGATGGCCAAGTTGAGAAGATTCACCACTATACACTACTTGATGGAGAAATGATAATAGATACTATGCCAGACTCGCAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGACAATTAATCATGCTCCGGTCATTGAGCGTCCTTTCTACGAACGGTGGAAGATGCTTGAAAAAGAAGTGATCGAACCTCGCAATTACGAGCGCCAGAATATTTACCAAAGCAGGAACCCTCATTATAGATATGACCTAGAGCCATTCAGGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAAGGTCTTTTAAAGTGGAAATATCCAGAAATGAACTCAGTTGACTTCCTATTCGAGGTTTTGGGTGAAGATGATTCTCAGGTTCTTATTTTGTTCGAACGAGGAAAGAGGAAGACCATGGAAGGAAATAGGGTTAAGTTCAAAGCTGAATGTTGGCTGGTCGAGTACTGGGGCTTTGATGACCACAAGCTCTTGCATATGTGGCTAATTCTGGCTGGCAATCTATCTATCTTTCTCAACGTATATTCTCAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATTGTTGAGTGCTCTTGGGATTCTGATGAACAAGTATGGGTGTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACTTATAAAAAGGTCATGCGGAGCATTAGAGACAACATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTGCCCATGTATGCAGATAGGATAAGGAATGATAGTAAAGCGGCCCAACATACAAATTCAACACGACGGAGGCTACGGTGTGGCGGATTCATGAAATTCTCGGTGATTTCAGCTCTTTTGATTTGTTTAATTCTCTTCGCTCCGTTGAAATGCATTCACGGCGAGGAGGCCAAGAAAAACAAATTTCGGGAACGAGAAGCCACGGATGATGCCCTTGGATATCCTGAGATAGACGAGGATGCTTTGTTGAATACACAATGTCCAAAGAATTTGGAGCTAAGATGGCAAACGGAAGTGAGTTCTAGCATATATGCTACCCCATTGATCGCTGATATTAACAGTGATGGGAAACTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAAGTTCTAGAAGGTTCTGATGGAGACAAAATGCCAGGGTGGCCGGCTTTCCATCAGTCGACTGTGCACGCTAGTCCTCTTCTATATGACATAGACAAAGATGGTGTGAGGGAAATAGCTTTGGCCACATACAATGGAGAAGTGCTCTTTTTCAGGGTGTCAGGATATATGATGACAGATAAGTTAGAGATACCACGTCGCCGTGTGCGCAAGAATTGGTATGTGAGTTTAAATCCAGATCCAGTGGACCGGTCTCATCCAGATGTTCATGATGAACAACTTGTCGCAGAAGCAACTAAGACAAAATCAATCTCTCAAACAAATGGAAGTGTTCCAGAGTTAAACCATACAACCGAGACCACGATGAATGGAAGTGTGACTGAACTAAATACTTCGGCTACCATACCAACTCAAATGTTGAATATTTCAGATACAGGGAATAATAATAGTACGGTGAATGACAGCAAAGTTGAACCGGATATTGTCCTGCCTACAAGCATGGCCAATAACGCTTCTATGAATGCTACAACTGGAATACTTGATAATAAGAATGGAACCGGGACGAGTAGGCGACTTTTGGAAGTTAGTGACTCCAAACAATCTCAAGAAGATGGTTCTAGGTCCAAGGCAGATGGTAGTGGAGACGAGCATGTTGCCACAGTTGAAAATGATGAAGCTTTGGAAGCAGAGGCTGATTCATCATTTGATATATTCCGTGAAAATGATGAGCTGGCTGATGAGTATAATTATGACTATGATGATTATGTTGATGAATCCATGTGGGGAGATGAGGAGTGGACTGAAGTTAAGCATGAAAAAGTGGAGGAATATGTGGATATTGATGCACATTTATTGTGTACTCCTGTCATAGCTGACATTGACAACGATGGGGTATCTGAAATGATTGTAGCAGTTTCATACTTTTTTGATCACGACCATTGCTTGCTGTTGCTGGTTCATAGCAAGGTGAGAGAAAAGTTTCCTCTTGAAATGGCTGATATTCAGGGAGCCGTTGTTGCAGCTGATATCAATGATGATGGGAAAATTGAACTTGTGACTGCTGATACACACGGAAATGTTGCTGCCTGGACTGCTCAAGGTCAAGAAATTTGGGAAACAAATCTAAAGAGCCTTATACCGCAGGGTCCATCCATTGGCGATGTTGATGGGGACGGTCATACTGATGTGGTGGTGCCGACAGTATCAGGAAATATATATGTTCTCAGTGGCAAGGATGGGTCATTTCTTCGTCCTTACCCCTATAGAACTCATGGAAGGGTGATGAATCAAGTTCTTCTTGTTGATCTGAACAAACGCGATGACAAAAAGAAGGGGCTTACTCTTGTCACATCATCGTTTGATGGGTATTTGTATCTCATTGATGGACCTACATCATGTGCTGATGTTATTGACATTGGCGAGACTTCATATAGCATGGTTCTGGCTGACAATGTTGATGGCGGAGATGATCTTGATCTTATTGTCTCAACCATGAATGGAAATGTTTTCTGCTTTTCAACTCCTGCTCCTCATCATCCTCTCAAGGCATGGAGATCAACTAATCAAGGAAGAAACAATGTTGCAGTCCGGCACAACCGTGAAGGTGTTTTCGTTTCACATTCATCTAGAACTTTCCGTGACGAGGAAGGCAAGAACTTCTGGGTGGAGATTGAGATTGTAGACCGTTACAGAAATCCATCAGGGACCCAAGCACCATATAACGTCACTACAACCTTGATGGTTCCTGGCAATTACCAGGGGGAGAGGAAAATAACACAAAACCAAATCTTCAAAGAACCCGGCAAACATCGGATAAAACTTCCAACCGTCAGCGTTAGGACGACAGGCACTGTGCTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCGGATGAGTTCTCCCTCACATTCCACATGTATTACTATAAGCTCCTGAAGTGGCTTCTCGCCCTCCCGATGCTCGGAATGTTCGGTGTGCTCATGATCCTTCGCCCGCAAGAGCCCGTACCATTGCCATCATTTTCTCGGAACACTAACCTATGA 4395 42.62 MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIETAVSIARREREERKRRLKRDRSLERPVHDYQQPARDQFYPSKNQKSDRSRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPDYFELNFQLGLVIDLTNSYRYYTTSDLNKEGIKYVKVSLGIPCKGRDSVPDNKSVNMFVYEVIQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFSDARPPGIYKPDYVDALYAFYHERKPEAVVCPSTPEWKRSSDLDLNGEAVPDDDDDGGPAAPLNENHDDGAQVMTNDDILGDEIPEDQERALKQFCYQMLKLNAGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNSNDGQVEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMTINHAPVIERPFYERWKMLEKEVIEPRNYERQNIYQSRNPHYRYDLEPFRGWDDAYVPRTHEGLLKWKYPEMNSVDFLFEVLGEDDSQVLILFERGKRKTMEGNRVKFKAECWLVEYWGFDDHKLLHMWLILAGNLSIFLNVYSQDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRRLRCGGFMKFSVISALLICLILFAPLKCIHGEEAKKNKFREREATDDALGYPEIDEDALLNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRRVRKNWYVSLNPDPVDRSHPDVHDEQLVAEATKTKSISQTNGSVPELNHTTETTMNGSVTELNTSATIPTQMLNISDTGNNNSTVNDSKVEPDIVLPTSMANNASMNATTGILDNKNGTGTSRRLLEVSDSKQSQEDGSRSKADGSGDEHVATVENDEALEAEADSSFDIFRENDELADEYNYDYDDYVDESMWGDEEWTEVKHEKVEEYVDIDAHLLCTPVIADIDNDGVSEMIVAVSYFFDHDHCLLLLVHSKVREKFPLEMADIQGAVVAADINDDGKIELVTADTHGNVAAWTAQGQEIWETNLKSLIPQGPSIGDVDGDGHTDVVVPTVSGNIYVLSGKDGSFLRPYPYRTHGRVMNQVLLVDLNKRDDKKKGLTLVTSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPAPHHPLKAWRSTNQGRNNVAVRHNREGVFVSHSSRTFRDEEGKNFWVEIEIVDRYRNPSGTQAPYNVTTTLMVPGNYQGERKITQNQIFKEPGKHRIKLPTVSVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLALPMLGMFGVLMILRPQEPVPLPSFSRNTNL 1464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13277237 13299705 + Lsi01G015230.1 Lsi01g01523 654181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01523 1464 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 1103 1464 - -
Lsi01g01523 1464 Pfam FG-GAP-like repeat 1125 1181 IPR013517 -
Lsi01g01523 1464 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 176 245 IPR000387 GO:0016311|GO:0016791
Lsi01g01523 1464 Gene3D - 998 1330 IPR015943 GO:0005515
Lsi01g01523 1464 PANTHER - 1103 1464 IPR045232 -
Lsi01g01523 1464 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 268 IPR029021 -
Lsi01g01523 1464 Pfam mRNA capping enzyme, catalytic domain 346 481 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lsi01g01523 1464 Gene3D - 510 655 IPR012340 -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 979 1000 - -
Lsi01g01523 1464 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 306 512 - -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 1 85 - -
Lsi01g01523 1464 ProSitePatterns Tyrosine specific protein phosphatases active site. 198 208 IPR016130 GO:0016311|GO:0016791
Lsi01g01523 1464 Gene3D DNA ligase/mRNA capping enzyme 299 509 - -
Lsi01g01523 1464 SMART dsp_5 130 253 IPR020422 GO:0006470|GO:0008138
Lsi01g01523 1464 Pfam mRNA capping enzyme, C-terminal domain 515 646 IPR013846 -
Lsi01g01523 1464 SUPERFAMILY Nucleic acid-binding proteins 514 663 IPR012340 -
Lsi01g01523 1464 CDD Adenylation_mRNA_capping 317 512 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lsi01g01523 1464 SUPERFAMILY Integrin alpha N-terminal domain 738 1220 IPR028994 -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 22 66 - -
Lsi01g01523 1464 Gene3D Protein tyrosine phosphatase superfamily 82 287 IPR029021 -
Lsi01g01523 1464 CDD RNA_5'-triphosphatase 89 248 - -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 976 1000 - -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 268 302 - -
Lsi01g01523 1464 PANTHER - 693 1096 IPR045232 -
Lsi01g01523 1464 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 693 1096 - -
Lsi01g01523 1464 Pfam Dual specificity phosphatase, catalytic domain 126 251 IPR000340 GO:0008138|GO:0016311
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01523 - - K13917 csv:101209960 1158.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g853 Blo01g01243 Blo12g00395 Bda01g00178 . . . . . . . . Cma07g01044 Car03g00326 Car07g01026 Sed14g0658 Cpe10g00316 . Bhi03g02110 Tan03g0827 Cmetu08g0203 . Hepe04g0777 . . . . . . . . . . . Cone13ag1383 Cone19ag1374 Lsi01g01523 Csa04g01590 Chy08g00977 . . . . . Bpe04g00767 Bpe02g00885 Bma01g01829 . . Cmo03g00383 Cmo07g01089 . . . . . Cpe19g00501 . . . . . . . . . . . . . . . . . Cme08g02498
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi02g01949 . 90 390 Protein tyrosine phosphatase (PTP) family AT1G71860 62.6 6.4e-109 391.0
Lsi06g01680 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 0.0e+00 1092.8
Lsi11g01661 . 1 192 Protein tyrosine phosphatase (PTP) family AT2G04550 67.2 4.2e-67 251.1
Lsi04g00121 . 96 317 Protein tyrosine phosphatase (PTP) family AT3G52180 58.0 1.2e-84 310.1
Lsi04g01038 . 29 275 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 8.5e-107 383.6
Lsi03g01385 . 139 540 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.2e-183 637.5
Lsi10g01569 CCT 9 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.9 1.0e-74 276.9
Lsi11g01669 CCT 28 213 Protein tyrosine phosphatase (PTP) family AT2G32960 56.5 3.0e-58 222.2
Lsi06g00702 . 44 215 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 5.3e-55 211.5
Lsi11g00210 . 20 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.9 1.3e-80 297.0
Lsi07g01277 . 23 282 Protein tyrosine phosphatase (PTP) family AT2G35680 57.3 6.2e-80 294.7
Lsi11g00210 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.5e-46 180.3
Lsi10g01569 CCT 18 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.6 7.6e-78 287.0
Lsi06g00702 . 58 215 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.4e-58 223.0
Lsi11g01669 CCT 37 214 Protein tyrosine phosphatase (PTP) family AT4G03960 55.8 1.8e-55 212.6
Lsi06g00702 . 52 241 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.4e-79 292.0
Lsi10g01569 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.3e-56 216.5
Lsi04g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 66.1 2.5e-63 240.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi03g00522 . 14 730 Protein tyrosine phosphatase (PTP) family AT3G19420 52.3 1.4e-191 666.4
Lsi01g00954 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 50.7 7.1e-159 557.8
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi10g01181 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 3.8e-69 258.5
Lsi07g01214 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 2.0e-109 392.5
Lsi01g01523 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 60.6 1.1e-245 846.3
Lsi01g01523 . 5 669 Protein tyrosine phosphatase (PTP) family AT5G01290 56.6 1.6e-220 762.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01523 Lsi_Chr01 FPKM 7.551357 9.830098 18.555902 20.904009 10.57561 10.759236 11.095994 9.566072 7.466712 7.904855