Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01523 ATGATCGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACACATAGAGACTGCTGTCAGTATAGCAAGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAAAGAGATCGCTCTCTCGAGAGACCAGTGCATGATTACCAACAACCTGCTCGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAGCAGGCTTCCTCCAGGTTGGTTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGCATGATTCCTTCCAAGGTTCCTCTGGGTGAATCCTTCAATGATTGTATAACACCTGATTATTTTGAACTAAATTTTCAGCTCGGTTTGGTGATTGATTTGACAAATTCTTATCGTTATTATACAACATCAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGGTGAGTCTTGGAATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATATGTTCGTTTACGAGGTCATTCAGTTCCTTTCTCGTCAGAAACACTCGAAGAAGTATATTCTTGTCCATTGTACGCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCACTGTCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTACGTTGATGCTTTATATGCCTTTTACCATGAAAGAAAACCTGAAGCAGTTGTTTGCCCATCCACGCCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAATGGTGAAGCAGTTCCAGACGATGACGATGATGGAGGTCCTGCTGCTCCTTTGAATGAAAATCATGACGATGGTGCGCAGGTGATGACAAATGATGATATTTTGGGTGATGAGATACCTGAGGACCAAGAGCGTGCTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATGCTGGAGCAAGAGCAAATTTGCAATTTCCAGGGTCACATCCAGTGTCTCTTAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATATATGATGCTAATTACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTCGAAGAGTCCAAATGAGATTTCCGTACAGAAATTCAAATGATGGCCAAGTTGAGAAGATTCACCACTATACACTACTTGATGGAGAAATGATAATAGATACTATGCCAGACTCGCAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGACAATTAATCATGCTCCGGTCATTGAGCGTCCTTTCTACGAACGGTGGAAGATGCTTGAAAAAGAAGTGATCGAACCTCGCAATTACGAGCGCCAGAATATTTACCAAAGCAGGAACCCTCATTATAGATATGACCTAGAGCCATTCAGGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAAGGTCTTTTAAAGTGGAAATATCCAGAAATGAACTCAGTTGACTTCCTATTCGAGGTTTTGGGTGAAGATGATTCTCAGGTTCTTATTTTGTTCGAACGAGGAAAGAGGAAGACCATGGAAGGAAATAGGGTTAAGTTCAAAGCTGAATGTTGGCTGGTCGAGTACTGGGGCTTTGATGACCACAAGCTCTTGCATATGTGGCTAATTCTGGCTGGCAATCTATCTATCTTTCTCAACGTATATTCTCAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATTGTTGAGTGCTCTTGGGATTCTGATGAACAAGTATGGGTGTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACTTATAAAAAGGTCATGCGGAGCATTAGAGACAACATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTGCCCATGTATGCAGATAGGATAAGGAATGATAGTAAAGCGGCCCAACATACAAATTCAACACGACGGAGGCTACGGTGTGGCGGATTCATGAAATTCTCGGTGATTTCAGCTCTTTTGATTTGTTTAATTCTCTTCGCTCCGTTGAAATGCATTCACGGCGAGGAGGCCAAGAAAAACAAATTTCGGGAACGAGAAGCCACGGATGATGCCCTTGGATATCCTGAGATAGACGAGGATGCTTTGTTGAATACACAATGTCCAAAGAATTTGGAGCTAAGATGGCAAACGGAAGTGAGTTCTAGCATATATGCTACCCCATTGATCGCTGATATTAACAGTGATGGGAAACTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAAGTTCTAGAAGGTTCTGATGGAGACAAAATGCCAGGGTGGCCGGCTTTCCATCAGTCGACTGTGCACGCTAGTCCTCTTCTATATGACATAGACAAAGATGGTGTGAGGGAAATAGCTTTGGCCACATACAATGGAGAAGTGCTCTTTTTCAGGGTGTCAGGATATATGATGACAGATAAGTTAGAGATACCACGTCGCCGTGTGCGCAAGAATTGGTATGTGAGTTTAAATCCAGATCCAGTGGACCGGTCTCATCCAGATGTTCATGATGAACAACTTGTCGCAGAAGCAACTAAGACAAAATCAATCTCTCAAACAAATGGAAGTGTTCCAGAGTTAAACCATACAACCGAGACCACGATGAATGGAAGTGTGACTGAACTAAATACTTCGGCTACCATACCAACTCAAATGTTGAATATTTCAGATACAGGGAATAATAATAGTACGGTGAATGACAGCAAAGTTGAACCGGATATTGTCCTGCCTACAAGCATGGCCAATAACGCTTCTATGAATGCTACAACTGGAATACTTGATAATAAGAATGGAACCGGGACGAGTAGGCGACTTTTGGAAGTTAGTGACTCCAAACAATCTCAAGAAGATGGTTCTAGGTCCAAGGCAGATGGTAGTGGAGACGAGCATGTTGCCACAGTTGAAAATGATGAAGCTTTGGAAGCAGAGGCTGATTCATCATTTGATATATTCCGTGAAAATGATGAGCTGGCTGATGAGTATAATTATGACTATGATGATTATGTTGATGAATCCATGTGGGGAGATGAGGAGTGGACTGAAGTTAAGCATGAAAAAGTGGAGGAATATGTGGATATTGATGCACATTTATTGTGTACTCCTGTCATAGCTGACATTGACAACGATGGGGTATCTGAAATGATTGTAGCAGTTTCATACTTTTTTGATCACGACCATTGCTTGCTGTTGCTGGTTCATAGCAAGGTGAGAGAAAAGTTTCCTCTTGAAATGGCTGATATTCAGGGAGCCGTTGTTGCAGCTGATATCAATGATGATGGGAAAATTGAACTTGTGACTGCTGATACACACGGAAATGTTGCTGCCTGGACTGCTCAAGGTCAAGAAATTTGGGAAACAAATCTAAAGAGCCTTATACCGCAGGGTCCATCCATTGGCGATGTTGATGGGGACGGTCATACTGATGTGGTGGTGCCGACAGTATCAGGAAATATATATGTTCTCAGTGGCAAGGATGGGTCATTTCTTCGTCCTTACCCCTATAGAACTCATGGAAGGGTGATGAATCAAGTTCTTCTTGTTGATCTGAACAAACGCGATGACAAAAAGAAGGGGCTTACTCTTGTCACATCATCGTTTGATGGGTATTTGTATCTCATTGATGGACCTACATCATGTGCTGATGTTATTGACATTGGCGAGACTTCATATAGCATGGTTCTGGCTGACAATGTTGATGGCGGAGATGATCTTGATCTTATTGTCTCAACCATGAATGGAAATGTTTTCTGCTTTTCAACTCCTGCTCCTCATCATCCTCTCAAGGCATGGAGATCAACTAATCAAGGAAGAAACAATGTTGCAGTCCGGCACAACCGTGAAGGTGTTTTCGTTTCACATTCATCTAGAACTTTCCGTGACGAGGAAGGCAAGAACTTCTGGGTGGAGATTGAGATTGTAGACCGTTACAGAAATCCATCAGGGACCCAAGCACCATATAACGTCACTACAACCTTGATGGTTCCTGGCAATTACCAGGGGGAGAGGAAAATAACACAAAACCAAATCTTCAAAGAACCCGGCAAACATCGGATAAAACTTCCAACCGTCAGCGTTAGGACGACAGGCACTGTGCTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCGGATGAGTTCTCCCTCACATTCCACATGTATTACTATAAGCTCCTGAAGTGGCTTCTCGCCCTCCCGATGCTCGGAATGTTCGGTGTGCTCATGATCCTTCGCCCGCAAGAGCCCGTACCATTGCCATCATTTTCTCGGAACACTAACCTATGA 4395 42.62 MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIETAVSIARREREERKRRLKRDRSLERPVHDYQQPARDQFYPSKNQKSDRSRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPDYFELNFQLGLVIDLTNSYRYYTTSDLNKEGIKYVKVSLGIPCKGRDSVPDNKSVNMFVYEVIQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFSDARPPGIYKPDYVDALYAFYHERKPEAVVCPSTPEWKRSSDLDLNGEAVPDDDDDGGPAAPLNENHDDGAQVMTNDDILGDEIPEDQERALKQFCYQMLKLNAGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNSNDGQVEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMTINHAPVIERPFYERWKMLEKEVIEPRNYERQNIYQSRNPHYRYDLEPFRGWDDAYVPRTHEGLLKWKYPEMNSVDFLFEVLGEDDSQVLILFERGKRKTMEGNRVKFKAECWLVEYWGFDDHKLLHMWLILAGNLSIFLNVYSQDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRRLRCGGFMKFSVISALLICLILFAPLKCIHGEEAKKNKFREREATDDALGYPEIDEDALLNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRRVRKNWYVSLNPDPVDRSHPDVHDEQLVAEATKTKSISQTNGSVPELNHTTETTMNGSVTELNTSATIPTQMLNISDTGNNNSTVNDSKVEPDIVLPTSMANNASMNATTGILDNKNGTGTSRRLLEVSDSKQSQEDGSRSKADGSGDEHVATVENDEALEAEADSSFDIFRENDELADEYNYDYDDYVDESMWGDEEWTEVKHEKVEEYVDIDAHLLCTPVIADIDNDGVSEMIVAVSYFFDHDHCLLLLVHSKVREKFPLEMADIQGAVVAADINDDGKIELVTADTHGNVAAWTAQGQEIWETNLKSLIPQGPSIGDVDGDGHTDVVVPTVSGNIYVLSGKDGSFLRPYPYRTHGRVMNQVLLVDLNKRDDKKKGLTLVTSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPAPHHPLKAWRSTNQGRNNVAVRHNREGVFVSHSSRTFRDEEGKNFWVEIEIVDRYRNPSGTQAPYNVTTTLMVPGNYQGERKITQNQIFKEPGKHRIKLPTVSVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLALPMLGMFGVLMILRPQEPVPLPSFSRNTNL 1464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13277237 13299705 + Lsi01G015230.1 Lsi01g01523 654181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01523 1464 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 1103 1464 - -
Lsi01g01523 1464 Pfam FG-GAP-like repeat 1125 1181 IPR013517 -
Lsi01g01523 1464 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 176 245 IPR000387 GO:0016311|GO:0016791
Lsi01g01523 1464 Gene3D - 998 1330 IPR015943 GO:0005515
Lsi01g01523 1464 PANTHER - 1103 1464 IPR045232 -
Lsi01g01523 1464 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 268 IPR029021 -
Lsi01g01523 1464 Pfam mRNA capping enzyme, catalytic domain 346 481 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lsi01g01523 1464 Gene3D - 510 655 IPR012340 -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 979 1000 - -
Lsi01g01523 1464 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 306 512 - -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 1 85 - -
Lsi01g01523 1464 ProSitePatterns Tyrosine specific protein phosphatases active site. 198 208 IPR016130 GO:0016311|GO:0016791
Lsi01g01523 1464 Gene3D DNA ligase/mRNA capping enzyme 299 509 - -
Lsi01g01523 1464 SMART dsp_5 130 253 IPR020422 GO:0006470|GO:0008138
Lsi01g01523 1464 Pfam mRNA capping enzyme, C-terminal domain 515 646 IPR013846 -
Lsi01g01523 1464 SUPERFAMILY Nucleic acid-binding proteins 514 663 IPR012340 -
Lsi01g01523 1464 CDD Adenylation_mRNA_capping 317 512 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lsi01g01523 1464 SUPERFAMILY Integrin alpha N-terminal domain 738 1220 IPR028994 -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 22 66 - -
Lsi01g01523 1464 Gene3D Protein tyrosine phosphatase superfamily 82 287 IPR029021 -
Lsi01g01523 1464 CDD RNA_5'-triphosphatase 89 248 - -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 976 1000 - -
Lsi01g01523 1464 MobiDBLite consensus disorder prediction 268 302 - -
Lsi01g01523 1464 PANTHER - 693 1096 IPR045232 -
Lsi01g01523 1464 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 693 1096 - -
Lsi01g01523 1464 Pfam Dual specificity phosphatase, catalytic domain 126 251 IPR000340 GO:0008138|GO:0016311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01523 - K13917 csv:101209960 1158.67