Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01533 ATGGCAACTGCCGCCGCAACCTCCTCCTTCATCGGAACACGCCTCGCCGAATTGCGGCCGAGTTCCGGCCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAAAAGAGTCCGGCGAAGAAATCGCCGTCTTCAAAGACGATACCCGACCGGCCGCTGTGGTTTCCAGGAGCCAAAGCGCCGGAATGGCTGGACGGAAGCTTGGTAGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGACATAATCGGGACGAGATTTGAGAGTGCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAGCTGATCCATGGAAGGTGGGCAATGCTGGCCACACTCGGTGCTCTCTCTGTTGAAGGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAATTAGTGGAAGGTTCGTCCTACCTAGGGCAACCACTTCCCTTCTCCATCACCACATTGATATGGATCGAAGTTCTAGTGATTGGATACATTGAGTTCCAAAGGAATGCCGAGCTCGACCCAGAGAAGAGGTTGTACCCAGGAGGCAAGTTTTTCGACCCCTTGGGCTTGGCTGAGGATCCAGAAAAGAAAGCCGTGCTACAATTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTCGGGTTCGCGGTTCAGGCTGCTGTCACTGGCAAAGGCCCACTCAACAACTGGGCTACCCATCTTAGTGACCCTCTCCACACCACTATTATTGACAACTTCTCTTCTTAA 855 54.74 MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13449776 13452846 + Lsi01G015330.1 Lsi01g01533 654191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01533 284 Pfam Chlorophyll A-B binding protein 59 255 IPR022796 -
Lsi01g01533 284 Gene3D Chlorophyll a/b binding protein domain 53 284 - -
Lsi01g01533 284 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 2 284 - -
Lsi01g01533 284 SUPERFAMILY Chlorophyll a-b binding protein 45 282 - -
Lsi01g01533 284 MobiDBLite consensus disorder prediction 29 50 - -
Lsi01g01533 284 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 284 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01533 Lsi-Chr1:13449776 Lsi03g02207 Lsi-Chr3:33090052 4.25E-180 dispersed
Lsi01g01533 Lsi-Chr1:13449776 Lsi01g00172 Lsi-Chr1:1668479 4.83E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01533 K08915 - csv:101208740 542.732