Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01544 ATGAGAAAGCCTTGGCTAATGGAAAACGGAAGCCTGAAGCGTTTAACCAAAGAGCATCGACATGGCCATGGTCGAACGGCTCACAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATCTAACCCTCGTCTCCAAAATCCAATTCGGCTGTCTCCGCAAGTTTCTTATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTAGCTATTGTCGCTCAGAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTGAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACCGAGCAAATCGCTTATTTCACTGGTCCAACAGTTGGGGGCCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCATTGACACAAAGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGCTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTCTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGAAGGCAAGCTGATGTGAACTCCCTAATGCTGATGCTTTCGTTACTGTGCCACCTATTGCCGTTATTGTTTGGCTACGCCGCCTCCTCCGCCTCCACGGCCGCCGCCTCCACCCTCCACCTTTCCAGAGCCAGCAGCATTGTAATGCTCTCTGCTTACATTGCTTACTTGGTCTTCCAACTCTGGACTCATCGGCAACTATTTGAAGCCGAGGAAGTTGAAGACGACGACGCTCCTGAAGAAGAGGCAGTGATTGGATTCTGGAGCGCATTTGCATGGCTTGACATATCTTTGGGGGTTGCTTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCTATGTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAACCTGATGGAAACAGGGTCACTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCATTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATCATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGAATTGGCCGGGATCGGTTGCCTGCCTGCTGGAAAGCTTAGAAATTTCAAAATGCTGGGGAGTTTGATGAAGGCAAATAAAACTGAAGACAAAATTCCCTTTCGTTGTCTCTCCCGCGGCCTACCTTATCTTTTTCATGCTTCCTCTTCAATAAACAAATTTCTCTCCAATGGCGAAACCCGCGAGAAACGAAGACAACGCTGCATTGGTATCTCTGAAGGATTATGGAGCAATAACGCTCAACTCTGTCGTATTCCGGCTGCCGATTGCCGGCGCCTTCGATGCAAATTTGCGTGCATTTCGGTTGTGGAAAAGAGAGACCAACACGAATTCGCACCGTCTCCGTCTCAGCTCCTGACGCATCCACTGGCTTTACTCGCGTTGGTGCCCAAAGACGCCGCGCTCTTTGCCGCCGGTGCTGTCGCCGGTGCTGCCGCGAAGACTGTAACGGCTCCTCTCGACCGTATCAAGCTTCTTATGCAGACTCATGGTGTACGAGTAGCGCATGAAGGCACTAAGAAAGCAATTGGTTTCATTGAGGCTATGACAACTATAGGTCAGAACGAAGGAGTTAAAGGTTACTGGAAAGGCAACCTTCCTCAGGTCATACGGGTTATACCTTATAGTGCTGTCCAGCTTTTTGCTTATGAATTTTACAAGAAACTCTTAAGGGGGAAGGATGGTGAACTATCTGTGCTTGGAAGACTTGCTGCAGGTGCTTGTGCTGGCATGACATCTACTTTTATCACATACCCACTAGATGTCCTAAGATTACGGTTGGCAGTTGAACCAGGTTACCGAACTATGTCTGAGGTTGCCTTGAATATGCTAAAAGAGGAAGGCATTGCGTCCTTCTACTATGGTCTTGGACCTTCCCTTATTGGCATAGCCCCTTATATTGCCGTGAACTTCTGCATTTTTGACTTATTGAAGAAGTCTTTGCCAGAGAAAGTTCAAAAGAAAACTGAAACATCTCTACTAACAGCCTTGATGTCCGCTTCCTGTGCCACACTAACGTGTTATCCTTTGGACACTGTGAGAAGACAGATGCAGATGAGGGGCACACCTTACAAGACAGTTTTGGAAGCCATCTCAGGTATCGTTGCACATGATGGAGTCGTTGGCTTGTACAGGGGTTTTGTTCCAAATGCTTTGAAGACCCTTCCAAACAGCAGCATTAGGCTTACTGTTTACGACTTTGTGAAGCGTCTCATAGCTACCAGCGAAAAGGAGTTTCAGCAAATAGTTGAAGATAATCGTGAGAAGAAAAGCCAAACAAAAGAGTGTTTAGCTTTGAAAACGCTTTCACTCCGCATGTCTGGCGCTGTGCAACTCTCATTGCCTTCTTGTGCGTTTGAGTCTTCAAGTTTGATTCACAGTGGAAGACTGCGAAATCGTCGTCAGATTTTCTGCAACCAAACCGACCTCCCTCATGAAGAAGACGATGAAAAGAACGACGTTGATCGCAGCAGAGAACTAATCCAGCGGCGAGTGATTTTGGTCGAGAAGTACGGAAATAGCGCTATGAAGAAGTCGGTGATGCTTCCAGATCTCATAACAGATTTTATATTACCCACGGGATTCCCAGAATCAGTTTCAGATGATTACTTGCAGTACATGATACGGCAGTTCCCCACTAATGTTACTGGATGGATCTGTCACACGTTGGTCACATCCAGTCTCCTCAAGGCAGTTGGTATAGGCTCCTTCTCAGGAACTTCTGCAGCCGCTTCCGCTGCTGCCATCAGCATCTTTGATCTTGCTACTCCATTGTATCCTAGCTATTTTCTACCATTGGCTTCTCTTGGAAATCTTACCAAGAAAAGCTTAAAGATATTCAACTATGTTGTTGATAATTATGCATTCATCGCTGTTGCGAGAGGACTCAAAGATCCTTCATTTCGAGTTATTCAAAACCATTTTGCAGTTTCAGGAAATTTGGGAGAGATAGCAGCAAAGATAAATCTGAAACGTGCTCGTATCCTAGCAAGGGCTTACATTTTGCACAACAAAGTACCAGGAACATTTGACTGCAACAGAGAAGAAAACATATTAGTGTGGGAAAGATTTACAAGGCCATCAATTATCTTTGGTGTGTCATTGGAGGAGATGATGGGTGGTGATAGATCTTCTTCCACGGTGATGAAACTTTTGAAATTATATGCCAATGAGAAACACATCCTCATGCTGGACTCGCAAGATAAAGACTTAAAGGTCGTCGTCTCCTTCAAGGTGGGTGCTTCTAGCATGACAGTTTTACGTAGTATTTGGCAGACTTACTGGCTCGATAAGCACTGGGATGCCACGGAGAACGTCGTCGATCAGCTTGCACGAAGCCTATCGGAGATGGAAGATAAGTTCAATGATTTTGTGCAACTGTTGGAGGGAGCTGGTTGGGATACACATCAATTGAGTTTAAAGAGCCCCACTCCTTAA 3534 45.53 MRKPWLMENGSLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKIQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEVEDDDAPEEEAVIGFWSAFAWLDISLGVALGSATQIALFVIPMCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEELAGIGCLPAGKLRNFKMLGSLMKANKTEDKIPFRCLSRGLPYLFHASSSINKFLSNGETREKRRQRCIGISEGLWSNNAQLCRIPAADCRRLRCKFACISVVEKRDQHEFAPSPSQLLTHPLALLALVPKDAALFAAGAVAGAAAKTVTAPLDRIKLLMQTHGVRVAHEGTKKAIGFIEAMTTIGQNEGVKGYWKGNLPQVIRVIPYSAVQLFAYEFYKKLLRGKDGELSVLGRLAAGACAGMTSTFITYPLDVLRLRLAVEPGYRTMSEVALNMLKEEGIASFYYGLGPSLIGIAPYIAVNFCIFDLLKKSLPEKVQKKTETSLLTALMSASCATLTCYPLDTVRRQMQMRGTPYKTVLEAISGIVAHDGVVGLYRGFVPNALKTLPNSSIRLTVYDFVKRLIATSEKEFQQIVEDNREKKSQTKECLALKTLSLRMSGAVQLSLPSCAFESSSLIHSGRLRNRRQIFCNQTDLPHEEDDEKNDVDRSRELIQRRVILVEKYGNSAMKKSVMLPDLITDFILPTGFPESVSDDYLQYMIRQFPTNVTGWICHTLVTSSLLKAVGIGSFSGTSAAASAAAISIFDLATPLYPSYFLPLASLGNLTKKSLKIFNYVVDNYAFIAVARGLKDPSFRVIQNHFAVSGNLGEIAAKINLKRARILARAYILHNKVPGTFDCNREENILVWERFTRPSIIFGVSLEEMMGGDRSSSTVMKLLKLYANEKHILMLDSQDKDLKVVVSFKVGASSMTVLRSIWQTYWLDKHWDATENVVDQLARSLSEMEDKFNDFVQLLEGAGWDTHQLSLKSPTP 1177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13564225 13592705 - Lsi01G015440.1 Lsi01g01544 654202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01544 1177 Pfam Vitamin B6 photo-protection and homoeostasis 881 945 IPR006968 -
Lsi01g01544 1177 Pfam Mitochondrial carrier protein 501 591 IPR018108 -
Lsi01g01544 1177 Pfam Mitochondrial carrier protein 595 682 IPR018108 -
Lsi01g01544 1177 Pfam Mitochondrial carrier protein 690 773 IPR018108 -
Lsi01g01544 1177 Gene3D - 119 363 IPR044880 -
Lsi01g01544 1177 PRINTS Mitochondrial carrier protein signature 501 514 IPR002067 GO:0055085
Lsi01g01544 1177 PRINTS Mitochondrial carrier protein signature 652 670 IPR002067 GO:0055085
Lsi01g01544 1177 PRINTS Mitochondrial carrier protein signature 514 528 IPR002067 GO:0055085
Lsi01g01544 1177 PRINTS Mitochondrial carrier protein signature 695 717 IPR002067 GO:0055085
Lsi01g01544 1177 PRINTS Mitochondrial carrier protein signature 563 583 IPR002067 GO:0055085
Lsi01g01544 1177 PRINTS Mitochondrial carrier protein signature 611 629 IPR002067 GO:0055085
Lsi01g01544 1177 SUPERFAMILY Mitochondrial carrier 499 767 IPR023395 -
Lsi01g01544 1177 Gene3D Mitochondrial carrier domain 498 777 IPR023395 -
Lsi01g01544 1177 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 5 279 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lsi01g01544 1177 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 279 369 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lsi01g01544 1177 ProSiteProfiles Solute carrier (Solcar) repeat profile. 686 770 IPR018108 -
Lsi01g01544 1177 Pfam Sodium/calcium exchanger protein 90 247 IPR004837 GO:0016021|GO:0055085
Lsi01g01544 1177 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 5 279 - -
Lsi01g01544 1177 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 279 369 - -
Lsi01g01544 1177 ProSiteProfiles Solute carrier (Solcar) repeat profile. 596 679 IPR018108 -
Lsi01g01544 1177 ProSiteProfiles Solute carrier (Solcar) repeat profile. 496 588 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01544 Lsi-Chr1:13564225 Lsi07g00632 Lsi-Chr7:6769396 2.17E-53 dispersed
Lsi02g00140 Lsi-Chr2:1159217 Lsi01g01544 Lsi-Chr1:13564225 1.26E-27 transposed
Lsi07g01449 Lsi-Chr7:21048190 Lsi01g01544 Lsi-Chr1:13564225 3.31E-06 transposed
Lsi09g01419 Lsi-Chr9:22203709 Lsi01g01544 Lsi-Chr1:13564225 2.04E-10 transposed
Lsi11g01699 Lsi-Chr11:25167552 Lsi01g01544 Lsi-Chr1:13564225 4.90E-27 transposed
Lsi01g01544 Lsi-Chr1:13564225 Lsi03g02209 Lsi-Chr3:33099706 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01544 K14684 - csv:101214343 654.44