Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01550 ATGGAAGATTATTGCGATCTCCGCCAAGCTGTTTTTTACCGGCGGCCGAATCGAATCGGCGTTAGTGCGGAGTCGGCGGTGGCGGGGGATAGGTTTCCGCCGTGGAGTGTACCGGAGACGAAGGAATTGCTTGCGATCAGAGCGGCGTTGGATAGAAGCTTCTCGGAGATGAAACAGAATAGGATGCTTTGGATTTCGGTGGCCGATAAGATGAAGGCGAAAGGCTTCAATCGGAACGATGAGCAGTGTAAGTGTAAATGGAAAAATCTCGTCACTCGTTATAAGGTAATGGATTNTACTAAATTGAAGGTCAGAGATGGTTGTGAAACCATGGATCCCAAAGCTCTAAAGCAGCAATTTCCATTTTACGACGACCTTCATACCATTTTTACTGCAAGGATGCAAAAGAATTGGTGGATCGAAGCCGAAGACCGTTCGGGAGGCTCCAAAAGGAAAGCCACCGAGCTATTCTCCAGCGAGGATCCGAACGGTAATAAAATCGACGAAGACGAAGATGAAGACAAAGTATTCGGGTCAACGAAAACGAAAAAGGGTACGAAAAAGGGGAAATGGAGAAGGGAAGAACATGAGAGGAACTTGAAGGAAATATTGAAGGGTTTTGTGAAAAGAGAGATGGAAATGGAGAGGCAATGGAGAGAAGCATTTAGGGTTAGAGAGGAAGAGAGAAGGTTAAAAGAGGAAGAATGGAGGATGAAAATGGAAGCCATTGAGAGAGAGAGGATGATGATGGAGATATTATGGAGAGAAAATGAAGAGAAGAGAAGAGAGAGAGAAGAAGCAAGGGCTGAGAAGAGAGATGCTTTGATCTCAGCTTTGTTGAGAAGCTTCACATAA 855 45.15 MEDYCDLRQAVFYRRPNRIGVSAESAVAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYKVMDXTKLKVRDGCETMDPKALKQQFPFYDDLHTIFTARMQKNWWIEAEDRSGGSKRKATELFSSEDPNGNKIDEDEDEDKVFGSTKTKKGTKKGKWRREEHERNLKEILKGFVKREMEMERQWREAFRVREEERRLKEEEWRMKMEAIERERMMMEILWRENEEKRREREEARAEKRDALISALLRSFT 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13674463 13676891 + Lsi01G015500.1 Lsi01g01550 654208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01550 284 PANTHER - 1 283 - -
Lsi01g01550 284 ProSiteProfiles Myb-like domain profile. 34 91 IPR001005 -
Lsi01g01550 284 Pfam Myb/SANT-like DNA-binding domain 34 128 IPR044822 -
Lsi01g01550 284 Gene3D - 35 96 - -
Lsi01g01550 284 MobiDBLite consensus disorder prediction 151 172 - -
Lsi01g01550 284 CDD GT1 35 95 - -
Lsi01g01550 284 Coils Coil 250 277 - -
Lsi01g01550 284 PANTHER - 1 283 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01550 Lsi03g02220 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01550 Lsi-Chr1:13674463 Lsi07g00753 Lsi-Chr7:8241774 7.68E-27 dispersed
Lsi01g01550 Lsi-Chr1:13674463 Lsi03g02220 Lsi-Chr3:33225176 6.46E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24689 PF13837 Myb_DNA-bind_4 2.70E-16 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01550 - - csv:101218250 357.836