Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01574 ATGGCTACAAGCGTCTCGCACTCTCCCGATTTCCGCCCTGAAGTTTCAGTTACGCCGCCGACCCATGACGGCCTTTATTTCTGGCAGTTTATGATCGCCGGGTCAATTGCAGGGTCGGTCGAGCACATGGCGATGTATCCAGTGGATACTCTCAAGACCCGAATACAAGCCCTCGGCGGTGGATCGTCAACAGTCCGACAAGCACTCGGCTCGATTCTGAAGGTGGAAGGTCCGGCAGGGCTCTACCGTGGAATCGGAGCAATGGGTTTGGGAGCAGGACCTGCACACGCAGTCTATTTCTCAGTATATGAGTTTTGCAAAGAAGGGTTTTCAATGGGAAATAACAACAACCCATTAGCGCACGCCATTGCTGGAGTTTGTGCGACGGTGACGAGCGACGCAGTGATAACGCCGATGGATGTGGTGAAACAGAGGCTGCAGTTGAAGAGTAGTCCATATAAAGGAGTGGGAGAGTGTGTGAGGAGGATTTTGGTTGAGGAAGGAATTGGGGCGCTGTATGCTTCTTATCGGACGACGGTTGTGATGAATGCGCCGTATACGGCGGTGTATTTTGCGACTTATGAAGCTGCAAAAAGGGGATTGAAGGAGGTGTCGCCGGGAAGTGACAACGACGAGAGGCTGATTGTTCATGCTACGGCTGGTGCGGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACACCATTAGACGTTGTGAAAACTCGGCTCCAGTGCCAGGGAGTATGTGGCTGTGACAAATTTTCAAGCAGTTCAATTGGGTACGTACTTGGGTGTGTGGTGAAGAAAGACGGCTACAGTGGGCTGATGAAGGGATGGATTCCAAGGATAATGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACTTATGAGGCTTCAAAAACCTTCTTTCAACATCTCCACAATAACAACAATTAG 936 51.18 MATSVSHSPDFRPEVSVTPPTHDGLYFWQFMIAGSIAGSVEHMAMYPVDTLKTRIQALGGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKEGFSMGNNNNPLAHAIAGVCATVTSDAVITPMDVVKQRLQLKSSPYKGVGECVRRILVEEGIGALYASYRTTVVMNAPYTAVYFATYEAAKRGLKEVSPGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGCVVKKDGYSGLMKGWIPRIMFHAPAAAICWSTYEASKTFFQHLHNNNN 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13942708 13945585 + Lsi01G015740.1 Lsi01g01574 654232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01574 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 109 IPR018108 -
Lsi01g01574 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 200 IPR018108 -
Lsi01g01574 311 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Lsi01g01574 311 PRINTS Mitochondrial carrier protein signature 30 43 IPR002067 GO:0055085
Lsi01g01574 311 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085
Lsi01g01574 311 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Lsi01g01574 311 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085
Lsi01g01574 311 Pfam Mitochondrial carrier protein 117 202 IPR018108 -
Lsi01g01574 311 Pfam Mitochondrial carrier protein 26 111 IPR018108 -
Lsi01g01574 311 Pfam Mitochondrial carrier protein 213 305 IPR018108 -
Lsi01g01574 311 Gene3D Mitochondrial carrier domain 110 311 IPR023395 -
Lsi01g01574 311 SUPERFAMILY Mitochondrial carrier 23 297 IPR023395 -
Lsi01g01574 311 PANTHER MITOFERRIN-1-RELATED 2 311 - -
Lsi01g01574 311 PANTHER MITOFERRIN-LIKE 2 311 - -
Lsi01g01574 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 302 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01574 Lsi-Chr1:13942708 Lsi10g01460 Lsi-Chr10:18705393 4.66E-12 dispersed
Lsi01g01574 Lsi-Chr1:13942708 Lsi08g01194 Lsi-Chr8:20513216 3.42E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01574 K15113 - csv:101210464 599.742