Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01580 ATGACGTCTGAGAATTCTAGTGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTATGTTTCTATAGTGGACACTTTGGAGAAGTGGAAGAAGTTGAACAATCAAATGGAGGATTTGGCAAAAGATGGAGTAGAGGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGCAATTTCAGAGGCGTTAGACAGAGGACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCAATAGCTAGTAATAATACCCGTGTGAAGAAGAAAGGCAGTCGTCTATGGCTTGGCACTTTTGCCACTGCTCACCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGCCCTTTTGCCCGTCTCAATTTTCCTGATTCTTCTTCTTCTTCTCCTCCTCTTCTGAAACCGTTAACAGCAGAGCATTCTGATACGATATCCCCTGTTGCTTCATCCTCCTCGTCTTCTTCCTTCTTTAATGGACTATCTGCAGAGAAGATGAACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGACCTGAAGGTGAAAGTGGAAGAAACAGCAAGAAGTAGAATCAATTATACAGATGCTAAACCCAATTCATTTTATGATTCAAGCATTGGGAACAGATTAACAGAAGGAAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGCCATGATATTAATACAGACAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTGAACGAATGCAATCAATATATGCTACAGAAGCTTCAGAGTGATCCATATGCTAGAACTTACTGGATTCCAGCCGATTGGGAGATCGGCGATCTTGGGTCCGCAACGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTACGGAGATTGTATGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAATACATGGGAGTTGGAGACCAGAGAGTTGATGATTGTAACAACTTTGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGTTTCCATGGATGA 1146 42.67 MTSENSSGEKTSRKRRNGYVSIVDTLEKWKKLNNQMEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSSPPLLKPLTAEHSDTISPVASSSSSSSFFNGLSAEKMNCCYSMDKQENCGYESMEDLKVKVEETARSRINYTDAKPNSFYDSSIGNRLTEGNIKEGLADVVRSHDINTDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYMLQKLQSDPYARTYWIPADWEIGDLGSATVMEGKPMEIESYGDCMAFNRDLSLLLDRQKYMGVGDQRVDDCNNFEFLRPDYDFGLEEERKWLDLCFHG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13999060 14000634 - Lsi01G015800.1 Lsi01g01580 654238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01580 381 Pfam AP2 domain 71 130 IPR001471 GO:0003700|GO:0006355
Lsi01g01580 381 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700|GO:0006355
Lsi01g01580 381 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Lsi01g01580 381 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Lsi01g01580 381 CDD AP2 71 139 IPR001471 GO:0003700|GO:0006355
Lsi01g01580 381 Gene3D AP2/ERF domain 72 139 IPR036955 GO:0003700|GO:0006355
Lsi01g01580 381 SUPERFAMILY DNA-binding domain 72 140 IPR016177 GO:0003677
Lsi01g01580 381 SMART rav1_2 72 144 IPR001471 GO:0003700|GO:0006355
Lsi01g01580 381 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 284 - -
Lsi01g01580 381 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01580 Lsi-Chr1:13999060 Lsi08g01358 Lsi-Chr8:21900887 2.29E-31 dispersed
Lsi01g01580 Lsi-Chr1:13999060 Lsi03g00291 Lsi-Chr3:3529309 1.85E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24692 PF00847 AP2 7.70E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01580 - K09286 csv:101215862 654.825