Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01604 ATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAACTGGCATGAGTGTGGCTATTAAAGTCATTGACAAAGAGAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTTAAGCATCCCAACGTCGTTGAGCTTTATGAGGTTATAGCAAGTAAAACTAAAATATACTTTGTCATGGAATATGTCAAAGGTGGTGAGCTATTCAATAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCACAGTAGAGGGGTATGCCATCGGGATTTGAAGCCTGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTGCTCCATACTACGTGTGGAACACCTGCTTATGTAGCTCCAGAAGTCATTAACAGGAGAGGTTACGATGGATGCAAAGCTGATATTTGGTCATGTGGAGTGATTTTATTCGTTCTATTGGCTGGATATCTCCCATTCCATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTGCACCAGAGGTGCGCAAACTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATATCTATTGCCAAAATAATGGGAAGTTCTTGGTTAAGGAGGGAGTTCAATGTGAAACCACAAATTAATGCAGAGGAAGTGAAAGAAGTGGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAGCTGAGGACAGAGACTCCGTTGGAAGAGAGCAGAAGCAAGAAATGGAAAAGCCATTGAATTTGAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTCGATTTGTCAGGATTGTTCGAGGAGACTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCACGATCATCTCTAAACTGCAAGACATTGCAAAGTGCCTGAAATTGAAAATCAAGAAGAAAGACAGAGGTCTACTGAAGATTGAAGGGTGTAAGGAAGGTCGAAAAGGGGCCGTATGTATTGATGCAGAGATTTTTGAGGTTACCCCATCATTCCATATTGTGGAAATGAAGAAGTCAAACGGAGATACTTTGGAATATCGCAAGATAATGAAAGATGATATTAGACCTGCTCTGAAGGACATTGTCTGGACTTGGCAAGGCGAACAGCAACAGAGACAGCTATCACAAGCAGAACAACAAGGACAAGAAGCTCACCATCTATCTTCTACTGATGCATTATTACACGGAACTGGTGGAGGCTGTCTTCTTAGAGTATGA 1437 40.85 MENKGAILMERYELGRLLGQGTFAKVYYARDIKTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNVVELYEVIASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFHDPNLMEMYKKIGKGEFKFPNWFAPEVRKLLSKILDPNPNTRISIAKIMGSSWLRREFNVKPQINAEEVKEVAPLDVDAVFVSTAEDRDSVGREQKQEMEKPLNLNAFDIISLSSGFDLSGLFEETDLKKEVRFTSNKPASTIISKLQDIAKCLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDDIRPALKDIVWTWQGEQQQRQLSQAEQQGQEAHHLSSTDALLHGTGGGCLLRV 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14328759 14332810 + Lsi01G016040.1 Lsi01g01604 654262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01604 478 Pfam NAF domain 314 372 IPR004041 GO:0007165
Lsi01g01604 478 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Lsi01g01604 478 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 451 - -
Lsi01g01604 478 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lsi01g01604 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lsi01g01604 478 CDD CIPK_C 318 432 - -
Lsi01g01604 478 Gene3D Kinase associated domain 1, KA1 311 437 - -
Lsi01g01604 478 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Lsi01g01604 478 Gene3D Transferase(Phosphotransferase) domain 1 92 273 - -
Lsi01g01604 478 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01604 478 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01604 478 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Lsi01g01604 478 CDD STKc_SnRK3 11 265 - -
Lsi01g01604 478 PANTHER - 2 451 - -
Lsi01g01604 478 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00235 Lsi-Chr1:2149310 Lsi01g01604 Lsi-Chr1:14328759 7.24E-180 dispersed
Lsi01g01604 Lsi-Chr1:14328759 Lsi10g01478 Lsi-Chr10:18893770 0 dispersed
Lsi05g01381 Lsi-Chr5:21702250 Lsi01g01604 Lsi-Chr1:14328759 2.41E-114 dispersed
Lsi09g01281 Lsi-Chr9:20651591 Lsi01g01604 Lsi-Chr1:14328759 5.87E-133 dispersed
Lsi10g00943 Lsi-Chr10:13851414 Lsi01g01604 Lsi-Chr1:14328759 8.78E-122 dispersed
Lsi01g01604 Lsi-Chr1:14328759 Lsi01g01606 Lsi-Chr1:14394431 1.03E-137 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83294 PF00069 Pkinase 9.50E-76 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01604 K07198 - csv:116406388 823.157