Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01606 ATGCCGGCCGCCTTCGACGACAATCCTCCGCCGGGGGGACTCACCCGCGGCGACTCCTTGCCGGAGGGAATTCTCTTCGGGAAATACGAACTCGGTAAGCTTCTCGGATGTGGAGCTTTCGCGAAGGTCTATCATGGCAGAAACGTTTTTACAGGACAGAGCGTTGCGATTAAAGCCGTTAACAAACTCAAGGTTCTCAAAGGCGGTTTCACGGCGCACGTTAAGAGAGAAATCGCTATCATGCGCCGTCTCCGTCATCCTAACGTTGTTCGTCTCTTTGAAGTTCTAGCGACGAAGACGAAGATTTATTTCGTTATGGAGTTCGCGAAAGGAGGAGAACTGTTTGCGAAAGTTTCGAAAGGAAGATTCAGTGAGAATCTCAGCCGTCGGTACTTTCAGCAGTTGATTACCGCCGTTGGATACTGTCATTCCAGAGGAATTTTTCATCGTGATTTGAAACCAGAGAATCTCCTTCTCGATGATAATTTCGATCTCAGAGTTTCGGATTTTGGACTTAGTGCTCTTACAGATCAGATTCGTCCTGACGGATTGCTTCACACGCTTTGTGGAACTCCGGCCTACGTCGCACCGGAAATTCTCGCTAAGAAAGGCTACGACGGCGCTAAAATCGATGTCTGGTCTTGTGGTATAATCCTCTATGTTCTTACTACAGGATATCTTCCTTTCAACGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCATTGCCCTAAGTGGACGTCTCCAGATCTGCGACGGTTTCTCTCGAGGCTTCTGGATACGAATCCTGAGACGAGGATTACTGTTGATGAGATTCATCAAGATCCGTGGTTTGTGAAGGGATTTCAGGAGGAGAAGTTTCAACAACTCGAAGATTCCGCTTCCGAGCTTTACGGTGATGTGAACAATGCGAAAGGTTTGAATGCTTTTGATCTTATTTCTTTCTCACCTGGCTTTGATTTGACTGGATTGATGAATGAGACGGAATTTTCTTCCGGCGTTGAGAGGTTTCTCTCCGCTGAGTCGCCTGAAAAGATCATTGTGACGGTCGAGGAGGTTACGAAGTCGGAGAATGCGGCGGTGGAGAAGAACGGCTGGGGAGCTAAAGTGGAAGGACTCGACGGCGGATTCGTCGCCGTGATTGATATTTTCCGGCTAACGGAGGAATTGGTGGTTGTTGAGATTAAAAACAGAGTGAGGGAAATAGATCAAGATCGTCAAATTTGGAAAGATATATTGAGACCTCAACTTGACTGTTTAATCTACCGGTCGGATTGA 1293 47.02 MPAAFDDNPPPGGLTRGDSLPEGILFGKYELGKLLGCGAFAKVYHGRNVFTGQSVAIKAVNKLKVLKGGFTAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFAKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTTGYLPFNDSNLMAMYRKIYRGDFHCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFVKGFQEEKFQQLEDSASELYGDVNNAKGLNAFDLISFSPGFDLTGLMNETEFSSGVERFLSAESPEKIIVTVEEVTKSENAAVEKNGWGAKVEGLDGGFVAVIDIFRLTEELVVVEIKNRVREIDQDRQIWKDILRPQLDCLIYRSD 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14394431 14395723 - Lsi01G016060.1 Lsi01g01606 654264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01606 430 Pfam NAF domain 312 368 IPR004041 GO:0007165
Lsi01g01606 430 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01606 430 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Lsi01g01606 430 Gene3D Transferase(Phosphotransferase) domain 1 23 312 - -
Lsi01g01606 430 SUPERFAMILY Protein kinase-like (PK-like) 25 296 IPR011009 -
Lsi01g01606 430 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Lsi01g01606 430 Gene3D Kinase associated domain 1, KA1 313 428 - -
Lsi01g01606 430 CDD CIPK_C 313 423 - -
Lsi01g01606 430 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01606 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lsi01g01606 430 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 22 428 - -
Lsi01g01606 430 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01606 430 PANTHER - 22 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01606 Lsi-Chr1:14394431 Lsi10g01479 Lsi-Chr10:18898095 0 dispersed
Lsi01g01604 Lsi-Chr1:14328759 Lsi01g01606 Lsi-Chr1:14394431 1.03E-137 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83295 PF00069 Pkinase 1.70E-70 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01606 - K12761 csv:101208826 799.66