Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01607 ATGGTGGTTTCTCCTCACTCTTTTCCACCGAGGAAACGGCGGCCATCCGCCGCCGCTTTCGTCTCCCCCAAACTCTCCGCCCCAATCCTCCTCGAATCCCTTCTCTCTCTCTCTCAAGAAATCTCCGCCATGAAACCACTCCAATTCCTCCTCAACCGTTACTCCAATTCCATGATTCGCAAATCCAGATTGCTCGAGATTTTCCTCGAAGACCTCCGCCGCAACCGGATCCTTTCCCTTTCCGCCTCCGCCTCCCTCTGTCTCGAGGAAATGTACATCGTTTTACAGAGAATCAAGACGTTGATTGAAGACTGTTCTAACGGAAGCAAGATGTGGTTACTTACACAGAACGAATCCATCGCCAATAATTTCCACGAACTCACTTTGGATTTATCGACTCTGCTCGATATTTTCCCTGTCAAAGACGCTGGATTAACCGAAGACGTAGAGGAATTGTTTTACCTCTTGAGAAATCAGTGCTCTGAATCCGCTGCTTTCCTCGATCCAATTGATGAAACTCTCAGATTCAGAGTATTGAAGATGATCGATCGAATCAAAGACGAAATCGTTCCGGATTATTCCGAATTGTCAGAGATTTTCTCCAGGATTGATATTAGCGATTCGTCGAGTTGTAGAGAGGAAATCGAGAATCTCGAGGATGAAATTCAGAATCAAACGGATGAGAAATCGAGATCTGATGTGATTGCTTTGATCGGATTAGTTCGTTACGCGAAATGCGTTTTGTATGGAGCGTCGACGACGAAATATGGTTTTCGGCGGAAAGATTCGATTTCCGATTTGGCTGTACCGGCGGATTTCAGGTGTCCGATTAGTTTGGATTTAATGCAAGACCCTGTCGTCGTGGCAACAGGTCATACGTACGATCGTGCGGCGATAACACTGTGGATTGAATCTGGACATAACACGTGTCCGAAGACAGGTCAGACTCTGGCCCACACGAACCTAATTCCGAACCAAGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAGAGAATTCCGTTTGACGTAATGGAAAGTAATAAAGAGAGAGTCAACGACGTCACGTTAAACAAAGCGGCGTTAGAAGCTATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCATGTCAACTGACTCTTCCCTAAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATTCCGGCAGCCGTGGATATATCGCCCAAGCCGGAGCTCTGCCGTTACTCGTCCAATATCTTAACTCCGACAACCCGATTCTCCAAGTTAACGCCGTCACGACGGTGCTCAACCTCTCCATTTTCGAAGCCAACAAATCGTTGATAATGGAAACCGACGGCGCGCTAATCGGAGTGATCGAGGTACTCCGGTCCGGCGCTACCTGGGAAGCGAAAGGAAACGCCGCCGCCACGATATTCAGCCTCTCCAGTATCCATTCTTACCGTCGGAGATTGGGGAGAAAGACACGTGTCATAAGGGGATTGCTTGATTTGGCTAAAGACGGGCCTACTAGTTCGAAGAGGGATGCTCTGGTTACCATTTTGACATTAGCCGGCGATAGGGAGACCGTCGGGAGGTTAATCGAAGGTGGGGTTATGGAGACGGTGAGTCATCTGATAAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGAAAAGGGGGATTTGTGGCGATTGCTTCGGGATTTTATCTGATTAAGAAATTGGGGGCGGTGTTGAGAGAGGGCTCCGATAGAGCCAAAGAGAGCACCGCGGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGTTGGCGTCAATGGCCGGGATTGAGAGAGTCATTTGGGAATTGATGGGGAGTGGGACGATGAGGGGGCGGCGGAAGGCAGCGTCCCTATTGAGAATACTCCGGCGATGGGCGGCAGGTTTGGATGCAATCGGTGGTGCCGGAGGAGATTCCATGACGGTTACATCGTCGAGAATCGGCGGCGACTCAACCACCATTGTTAGTTCGTCAAGACGAGCAATTGTGCATAGCTAG 2064 49.76 MVVSPHSFPPRKRRPSAAAFVSPKLSAPILLESLLSLSQEISAMKPLQFLLNRYSNSMIRKSRLLEIFLEDLRRNRILSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFYLLRNQCSESAAFLDPIDETLRFRVLKMIDRIKDEIVPDYSELSEIFSRIDISDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTTKYGFRRKDSISDLAVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNQALKNLIAMWCRQERIPFDVMESNKERVNDVTLNKAALEAMRMTATFLVNKLAMSTDSSLNDVVYELRVLAKTDSGSRGYIAQAGALPLLVQYLNSDNPILQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPTSSKRDALVTILTLAGDRETVGRLIEGGVMETVSHLINSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGAVLREGSDRAKESTAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDAIGGAGGDSMTVTSSRIGGDSTTIVSSSRRAIVHS 687
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 14430574 14432637 + Lsi01G016070.1 Lsi01g01607 654265
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01607 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 349 IPR013083 -
Lsi01g01607 687 SMART arm_5 399 439 IPR000225 GO:0005515
Lsi01g01607 687 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Lsi01g01607 687 Gene3D - 367 646 IPR011989 -
Lsi01g01607 687 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Lsi01g01607 687 SUPERFAMILY ARM repeat 372 644 IPR016024 -
Lsi01g01607 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Lsi01g01607 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515
Lsi01g01607 687 Gene3D - 52 140 IPR036537 GO:0007166
Lsi01g01607 687 PANTHER U BOX DOMAIN-CONTAINING 11 659 - -
Lsi01g01607 687 Pfam Armadillo/beta-catenin-like repeat 401 438 IPR000225 GO:0005515
Lsi01g01607 687 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 659 - -
Lsi01g01607 687 CDD RING-Ubox_PUB 273 315 IPR045210 -
Lsi01g01607 687 SUPERFAMILY RING/U-box 261 341 - -
Lsi01g01607 687 Coils Coil 208 235 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01607 Lsi-Chr1:14430574 Lsi02g00832 Lsi-Chr2:7809583 9.24E-136 dispersed
Lsi01g01607 Lsi-Chr1:14430574 Lsi02g00361 Lsi-Chr2:3074254 1.03E-94 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01607 - - csv:101205143 1171.38