Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01607 ATGGTGGTTTCTCCTCACTCTTTTCCACCGAGGAAACGGCGGCCATCCGCCGCCGCTTTCGTCTCCCCCAAACTCTCCGCCCCAATCCTCCTCGAATCCCTTCTCTCTCTCTCTCAAGAAATCTCCGCCATGAAACCACTCCAATTCCTCCTCAACCGTTACTCCAATTCCATGATTCGCAAATCCAGATTGCTCGAGATTTTCCTCGAAGACCTCCGCCGCAACCGGATCCTTTCCCTTTCCGCCTCCGCCTCCCTCTGTCTCGAGGAAATGTACATCGTTTTACAGAGAATCAAGACGTTGATTGAAGACTGTTCTAACGGAAGCAAGATGTGGTTACTTACACAGAACGAATCCATCGCCAATAATTTCCACGAACTCACTTTGGATTTATCGACTCTGCTCGATATTTTCCCTGTCAAAGACGCTGGATTAACCGAAGACGTAGAGGAATTGTTTTACCTCTTGAGAAATCAGTGCTCTGAATCCGCTGCTTTCCTCGATCCAATTGATGAAACTCTCAGATTCAGAGTATTGAAGATGATCGATCGAATCAAAGACGAAATCGTTCCGGATTATTCCGAATTGTCAGAGATTTTCTCCAGGATTGATATTAGCGATTCGTCGAGTTGTAGAGAGGAAATCGAGAATCTCGAGGATGAAATTCAGAATCAAACGGATGAGAAATCGAGATCTGATGTGATTGCTTTGATCGGATTAGTTCGTTACGCGAAATGCGTTTTGTATGGAGCGTCGACGACGAAATATGGTTTTCGGCGGAAAGATTCGATTTCCGATTTGGCTGTACCGGCGGATTTCAGGTGTCCGATTAGTTTGGATTTAATGCAAGACCCTGTCGTCGTGGCAACAGGTCATACGTACGATCGTGCGGCGATAACACTGTGGATTGAATCTGGACATAACACGTGTCCGAAGACAGGTCAGACTCTGGCCCACACGAACCTAATTCCGAACCAAGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAGAGAATTCCGTTTGACGTAATGGAAAGTAATAAAGAGAGAGTCAACGACGTCACGTTAAACAAAGCGGCGTTAGAAGCTATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCATGTCAACTGACTCTTCCCTAAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATTCCGGCAGCCGTGGATATATCGCCCAAGCCGGAGCTCTGCCGTTACTCGTCCAATATCTTAACTCCGACAACCCGATTCTCCAAGTTAACGCCGTCACGACGGTGCTCAACCTCTCCATTTTCGAAGCCAACAAATCGTTGATAATGGAAACCGACGGCGCGCTAATCGGAGTGATCGAGGTACTCCGGTCCGGCGCTACCTGGGAAGCGAAAGGAAACGCCGCCGCCACGATATTCAGCCTCTCCAGTATCCATTCTTACCGTCGGAGATTGGGGAGAAAGACACGTGTCATAAGGGGATTGCTTGATTTGGCTAAAGACGGGCCTACTAGTTCGAAGAGGGATGCTCTGGTTACCATTTTGACATTAGCCGGCGATAGGGAGACCGTCGGGAGGTTAATCGAAGGTGGGGTTATGGAGACGGTGAGTCATCTGATAAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGAAAAGGGGGATTTGTGGCGATTGCTTCGGGATTTTATCTGATTAAGAAATTGGGGGCGGTGTTGAGAGAGGGCTCCGATAGAGCCAAAGAGAGCACCGCGGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGTTGGCGTCAATGGCCGGGATTGAGAGAGTCATTTGGGAATTGATGGGGAGTGGGACGATGAGGGGGCGGCGGAAGGCAGCGTCCCTATTGAGAATACTCCGGCGATGGGCGGCAGGTTTGGATGCAATCGGTGGTGCCGGAGGAGATTCCATGACGGTTACATCGTCGAGAATCGGCGGCGACTCAACCACCATTGTTAGTTCGTCAAGACGAGCAATTGTGCATAGCTAG 2064 49.76 MVVSPHSFPPRKRRPSAAAFVSPKLSAPILLESLLSLSQEISAMKPLQFLLNRYSNSMIRKSRLLEIFLEDLRRNRILSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFYLLRNQCSESAAFLDPIDETLRFRVLKMIDRIKDEIVPDYSELSEIFSRIDISDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTTKYGFRRKDSISDLAVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNQALKNLIAMWCRQERIPFDVMESNKERVNDVTLNKAALEAMRMTATFLVNKLAMSTDSSLNDVVYELRVLAKTDSGSRGYIAQAGALPLLVQYLNSDNPILQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPTSSKRDALVTILTLAGDRETVGRLIEGGVMETVSHLINSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGAVLREGSDRAKESTAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDAIGGAGGDSMTVTSSRIGGDSTTIVSSSRRAIVHS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14430574 14432637 + Lsi01G016070.1 Lsi01g01607 654265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01607 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 349 IPR013083 -
Lsi01g01607 687 SMART arm_5 399 439 IPR000225 GO:0005515
Lsi01g01607 687 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Lsi01g01607 687 Gene3D - 367 646 IPR011989 -
Lsi01g01607 687 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Lsi01g01607 687 SUPERFAMILY ARM repeat 372 644 IPR016024 -
Lsi01g01607 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Lsi01g01607 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515
Lsi01g01607 687 Gene3D - 52 140 IPR036537 GO:0007166
Lsi01g01607 687 PANTHER U BOX DOMAIN-CONTAINING 11 659 - -
Lsi01g01607 687 Pfam Armadillo/beta-catenin-like repeat 401 438 IPR000225 GO:0005515
Lsi01g01607 687 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 659 - -
Lsi01g01607 687 CDD RING-Ubox_PUB 273 315 IPR045210 -
Lsi01g01607 687 SUPERFAMILY RING/U-box 261 341 - -
Lsi01g01607 687 Coils Coil 208 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01607 - - - csv:101205143 1171.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01607 Lsi-Chr1:14430574 Lsi02g00832 Lsi-Chr2:7809583 9.24E-136 dispersed
Lsi01g01607 Lsi-Chr1:14430574 Lsi02g00361 Lsi-Chr2:3074254 1.03E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g376 Blo01g01030 . Bda01g00060 . . . . . . . Cma03g00299 Cma07g01227 Car03g00261 Car07g01182 Sed14g0585 Cpe10g00996 . Bhi03g02213 Tan03g0722 Cmetu08g1604 . Hepe04g0691 . . Cla04g00653 Cam04g0651 Cec04g0772 Cco04g0823 Clacu04g0698 Cmu04g0693 Cre04g0745 . Cone10ag0439 . . Lsi01g01607 Csa04g01681 Chy08g00584 . . . . . . . Bma01g01714 . . Cmo03g00311 Cmo07g01269 . . . . . Cpe19g00149 . . . . . . . . . . . . . . . . . Cme08g02117
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009140 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 0 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01607 Lsi_Chr01 FPKM 5.493783 7.05756 1.671882 1.438749 0.440409 0.571266 0.766827 2.21003 2.81472 3.158451