Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01612 ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGATCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAACCAAGTCCACCTCAAAGATGTCTTCCATTCCCCTGAAGAATTACAACGTCTATACTCAGAAGTTCATCTCCTCAAAAACCTCGACCACGACTCGATCCTCCGATTCTACACTTCTTGGATCGATACTCATCGCCGAACGTTCAACTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCGATATCGAAGTAATCAAAAACTGGGCTCGTCAAATCCTACACGGTCTGGTTTATCTTCATGGTCACGATCCACCCGTAATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAATGGTCATCTCGGACAAGTTAAAATTGGTGATTTAGGACTCGCAACAATCCTTCATGATTCTAAATATGCTCATAGTATCATAGGTACACCAGAGTTCATGGCACCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCATTTGGAATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTACAGCGAGTGCTCTAACCCTGCTCAGATTTACAAGAAAGTTACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGCTTGGAAAATGTTTCAAAGAGGGTGCCTGCTAAAGAACTCTTGCTTGATCCATTTCTAGCACCTTCCAACAATAACAATGGCAGCTCTGATAATGAAGACTTATTGTCTTCATCTCTTTCTCCAAAGAAATCAATGGCAAGAAGAACACAAATGGTCATTTCTGGATCAATGAATCCCAAGGATGATTCAGTTTTTCTAAAAGCGCATATCAAAGTGAACAACGGTAAACCTAAGAATGTATATTTTTCATTCGACCCCATAAACGACACTGCAATCGACGTTGCGACTGAGATGGTTAAAGAGGTGGAAGTTATTAGTGATTGGGATCCATTGGAGATAGCTGTGATGATAAAGAAGGAGATATCCTCATTGATTCCAGATTGGGAGGAATGGGAGTTACCTAAAAACCACCATCAAGATAGCTTCAGCTATGCACAAGACGACGACGAAGACGACAACGATAACAATGATGATGACGAAAACTATGCAACAGAACATCCTTTCTACTATTGCTCCTCTCCTGCCTCCTCCTCAAATTCTCTTCAGGAGGATGTTCTGAATATTGATGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTAATATAAGCTTTTACTCAAACAATGAAGATGAATATGAATGTGGTTCAATTGTCAAAGGAAGAGAGCCACAATCCATCTCAACAACCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATGGTCGATCGAGAAATATTCGAGAGTCGATGTCGATCAAATAACTCGTCGCATAAACTCACGAGGGTGAAATCGATGGTGAACCTCCGTAGCGAGACGTTGCATCGGTCTTTAGTAGAGATGTTGTTGAAGAAGCGCTTATTCAATACGGTGGGTGCAATGGAGAATATTGGATATCAAAAGCCATAG 1692 40.43 MAQSIGYAETDPSDRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQVHLKDVFHSPEELQRLYSEVHLLKNLDHDSILRFYTSWIDTHRRTFNFITEMFTSGTLREYRQKYRNVDIEVIKNWARQILHGLVYLHGHDPPVIHRDLKCDNVFINGHLGQVKIGDLGLATILHDSKYAHSIIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRVPAKELLLDPFLAPSNNNNGSSDNEDLLSSSLSPKKSMARRTQMVISGSMNPKDDSVFLKAHIKVNNGKPKNVYFSFDPINDTAIDVATEMVKEVEVISDWDPLEIAVMIKKEISSLIPDWEEWELPKNHHQDSFSYAQDDDEDDNDNNDDDENYATEHPFYYCSSPASSSNSLQEDVLNIDDDDTSSSCSLNSFNYSNISFYSNNEDEYECGSIVKGREPQSISTTKQPTRFCPTMKMVDREIFESRCRSNNSSHKLTRVKSMVNLRSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14478314 14485402 - Lsi01G016120.1 Lsi01g01612 654270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01612 563 SUPERFAMILY Protein kinase-like (PK-like) 19 276 IPR011009 -
Lsi01g01612 563 MobiDBLite consensus disorder prediction 396 421 - -
Lsi01g01612 563 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01612 563 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 563 - -
Lsi01g01612 563 MobiDBLite consensus disorder prediction 401 415 - -
Lsi01g01612 563 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Lsi01g01612 563 Gene3D Transferase(Phosphotransferase) domain 1 100 281 - -
Lsi01g01612 563 CDD STKc_WNK 15 275 - -
Lsi01g01612 563 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 3 563 - -
Lsi01g01612 563 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01612 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Lsi01g01612 563 MobiDBLite consensus disorder prediction 277 299 - -
Lsi01g01612 563 SMART serkin_6 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01612 Lsi-Chr1:14478314 Lsi10g01482 Lsi-Chr10:18920267 0 dispersed
Lsi01g01612 Lsi-Chr1:14478314 Lsi09g01322 Lsi-Chr9:21071199 6.56E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83296 PF00069 Pkinase 9.60E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01612 K08867 - csv:101207665 897.886