Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01612 | ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGATCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAACCAAGTCCACCTCAAAGATGTCTTCCATTCCCCTGAAGAATTACAACGTCTATACTCAGAAGTTCATCTCCTCAAAAACCTCGACCACGACTCGATCCTCCGATTCTACACTTCTTGGATCGATACTCATCGCCGAACGTTCAACTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCGATATCGAAGTAATCAAAAACTGGGCTCGTCAAATCCTACACGGTCTGGTTTATCTTCATGGTCACGATCCACCCGTAATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAATGGTCATCTCGGACAAGTTAAAATTGGTGATTTAGGACTCGCAACAATCCTTCATGATTCTAAATATGCTCATAGTATCATAGGTACACCAGAGTTCATGGCACCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCATTTGGAATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTACAGCGAGTGCTCTAACCCTGCTCAGATTTACAAGAAAGTTACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGCTTGGAAAATGTTTCAAAGAGGGTGCCTGCTAAAGAACTCTTGCTTGATCCATTTCTAGCACCTTCCAACAATAACAATGGCAGCTCTGATAATGAAGACTTATTGTCTTCATCTCTTTCTCCAAAGAAATCAATGGCAAGAAGAACACAAATGGTCATTTCTGGATCAATGAATCCCAAGGATGATTCAGTTTTTCTAAAAGCGCATATCAAAGTGAACAACGGTAAACCTAAGAATGTATATTTTTCATTCGACCCCATAAACGACACTGCAATCGACGTTGCGACTGAGATGGTTAAAGAGGTGGAAGTTATTAGTGATTGGGATCCATTGGAGATAGCTGTGATGATAAAGAAGGAGATATCCTCATTGATTCCAGATTGGGAGGAATGGGAGTTACCTAAAAACCACCATCAAGATAGCTTCAGCTATGCACAAGACGACGACGAAGACGACAACGATAACAATGATGATGACGAAAACTATGCAACAGAACATCCTTTCTACTATTGCTCCTCTCCTGCCTCCTCCTCAAATTCTCTTCAGGAGGATGTTCTGAATATTGATGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTAATATAAGCTTTTACTCAAACAATGAAGATGAATATGAATGTGGTTCAATTGTCAAAGGAAGAGAGCCACAATCCATCTCAACAACCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATGGTCGATCGAGAAATATTCGAGAGTCGATGTCGATCAAATAACTCGTCGCATAAACTCACGAGGGTGAAATCGATGGTGAACCTCCGTAGCGAGACGTTGCATCGGTCTTTAGTAGAGATGTTGTTGAAGAAGCGCTTATTCAATACGGTGGGTGCAATGGAGAATATTGGATATCAAAAGCCATAG | 1692 | 40.43 | MAQSIGYAETDPSDRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQVHLKDVFHSPEELQRLYSEVHLLKNLDHDSILRFYTSWIDTHRRTFNFITEMFTSGTLREYRQKYRNVDIEVIKNWARQILHGLVYLHGHDPPVIHRDLKCDNVFINGHLGQVKIGDLGLATILHDSKYAHSIIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRVPAKELLLDPFLAPSNNNNGSSDNEDLLSSSLSPKKSMARRTQMVISGSMNPKDDSVFLKAHIKVNNGKPKNVYFSFDPINDTAIDVATEMVKEVEVISDWDPLEIAVMIKKEISSLIPDWEEWELPKNHHQDSFSYAQDDDEDDNDNNDDDENYATEHPFYYCSSPASSSNSLQEDVLNIDDDDTSSSCSLNSFNYSNISFYSNNEDEYECGSIVKGREPQSISTTKQPTRFCPTMKMVDREIFESRCRSNNSSHKLTRVKSMVNLRSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP | 563 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14478314 | 14485402 | - | Lsi01G016120.1 | Lsi01g01612 | 654270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01612 | 563 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 276 | IPR011009 | - | |
Lsi01g01612 | 563 | MobiDBLite | consensus disorder prediction | 396 | 421 | - | - | |
Lsi01g01612 | 563 | Pfam | Protein kinase domain | 21 | 275 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g01612 | 563 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 3 | 563 | - | - | |
Lsi01g01612 | 563 | MobiDBLite | consensus disorder prediction | 401 | 415 | - | - | |
Lsi01g01612 | 563 | Gene3D | Phosphorylase Kinase; domain 1 | 3 | 98 | - | - | |
Lsi01g01612 | 563 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 281 | - | - | |
Lsi01g01612 | 563 | CDD | STKc_WNK | 15 | 275 | - | - | |
Lsi01g01612 | 563 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED | 3 | 563 | - | - | |
Lsi01g01612 | 563 | ProSiteProfiles | Protein kinase domain profile. | 17 | 275 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g01612 | 563 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 141 | 153 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi01g01612 | 563 | MobiDBLite | consensus disorder prediction | 277 | 299 | - | - | |
Lsi01g01612 | 563 | SMART | serkin_6 | 17 | 275 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01612 | Lsi-Chr1:14478314 | Lsi10g01482 | Lsi-Chr10:18920267 | 0 | dispersed | |
Lsi01g01612 | Lsi-Chr1:14478314 | Lsi09g01322 | Lsi-Chr9:21071199 | 6.56E-140 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83296 | PF00069 | Pkinase | 9.60E-46 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01612 | K08867 | - | csv:101207665 | 897.886 |