Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01619 | ATGACATCTGGTCAGCCCTTGCTGGCTTCATCAGAATCTCCATCAGTTATTGAATACAGATCCCCATCTCGAAATCGCGGATCCGTTGGCTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGAGTGACATTGTGGATGTGAAGGAAAACTGCACCAGCCCTTTTGAAGATAACGGTTGGAGTAGTGAGAATTGCCTCAGACGGTCCACTTCGCTTTCTAGGAAGAGGCAGTTTTATACTGTTGGCTCTCTGTTTCCTCAGCAGTTTCCTTTTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGATGCATAATATTAATGATGACCCTGCAAGCTTTGAACTTACTAGGGTCCAAGAGAAGTTGCATAAGGCGCAAAGAAGTCGTCATAAGAGTATGCAGTTTGAAGATAATTTACAACATGACGATAATCCAAGGTTGATATACATCAATGATCCAAGGAGGACTAATGACAAGTATGAGTTCACAGGAAATGAGATCACCACCAGCAAGTACACATTGATTACTTTCTTGCCAAAGAACCTTTTTATTCAGTTCCACCGCGTAGCCTATCTCTATTTTCTTGCTATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTTCCCCTTCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTACGAAGATTGGCGTAGACACAGATCTGATCGTAATGAGAACAATAGACAGGCTCTGGTGTTTCAATCTGATGAATTCCGATTGAAAGTGTGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCTGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCCAGTGGCCTTGCTTACATCCAAACGATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCTGCAGTAGCTGAGGGGTGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTTAACGGCCATAAATTTCCCCTCAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTGAAGAACACTGAATGGATAATTGGGGTGGTTGTCTATGCCGGACAAGAGACAAAAGCCATGCTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATTTTCCTCTTTATCATGTGTCTAGTAGTGGCCCTTGGAATGGGCTTATGGCTCGTTCGGCACAAGGAACGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACAAATGGGGCAGATGATGGGAAGAGGTACAGGTTTTATGGTATACCTATGGAGACATTTTTCTCCTTTTTGAGTTCTATTATAGTGTTTCAGATTATGATACCGATATCCCTTTATATTACAATGGAGATGGTGAGACTGGGCCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTTCCTCAAGGTTCCAGTGCAGATCATTGAATATCAATGAGGATCTTGGTCAAGTTCGCTACATATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTTAAAAGAGCAAGTGTGCACGGGAAGAATTACGGGAACAACTTGTCTGAGGCATTTCCATCAATGTTGTATTCCATCCCAGGTACGGAAAATGATTTCACTGCTACCATCATCATAATTTTGTTATCCATGTTTGGGTTAGCTCATAAATATCCCGTAAGCGAAGCTGCCAATGCAATTGCCAAGGTATTATCTCCATTAGATGGCCAGCCTTTGTCCTGTGATGTTCTACCTCAATGTGATCTTTTTGCAACAGCAACTCTAGGGAGGAGGAGGTGGAAACTTAAATCTGAAGTTGCTGTTGATACCGAACTTGTCAAATTATTGCACAAGGACCTAAACGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCCGCATGCAATACTGTAATTCCTATTCACATGGATGACAAATCTATTTATGCAAATGGTGAATTGCACGAGGAGGATTTTGAAACTATTGATTATCAGGGGGAATCCCCTGATGAGCAAGCACTAGTTGCTGCAGCCTCCGCTTATGGATATACCCTTTTTGAGCGCACGTCTGGGCATATTGTTATTGATGTCAATGGTGAGAACTTAAGGTTAGACGTTTTGGGTTTACATGAGTTTGATAGTGTTCGCAAAAGAATGTCTGTCGTCATCAGATTCCCTGACAACACTATAAAGGTGCTGGTAAAAGGTGCCGATACCTCGATGTTGAGTATTTTAGGCACCGACTCTGATAGAGAAGAATTTATCAAGCGTACTACTCAGAACCATTTGTGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGAAAGATTCTGAATTTGAGCTGTGGCAGAGCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCAGACAGCAGCCCTTATAGAATGCAATCTAAAGCTTTTGGGTGCAACTGCGATTGAGGACAAGCTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGGCAGGCGGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATCGGTCTCTCCTGCAAACTGCTGACTTCTGATATGCAGTCAATAGTTATCAATGGAAATTCCGAGAATGATTGCAGGCGACTTTTAGCTGATGCTATGGAAAAATATAGTATTAAATCAACACAGTGTGGAAGTCAAAGACCGAAGCTGGAGAATTGTGAGAATGAATGTCATGATTTACCAAAGACATCTAGCATGTCAGATTTTAATGATGGGAAAGAAGACGTGACTGATAAACCACTAGCTCTGATAATTGACGGGAACAGTTTGGTGTATATTTTGGAGAAGGAATTGGAGTCTGAGGCAAGAATCTTGTTGTTACCTTTGAGAACCTTTACATGCCGCATCAATAATATAATTTTAATTTTTCATAGCTTGTTAATGATTGTTGAAATGATTCCTATTTTATGGCAGCTTTTTGACCTTTCAACTTCATGCGATGTTGTGTTATGCTGTCGTGTTGCTCCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGAGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGTGTTGGTATATGTGGACAGGAAGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGGTTCTTAAAAAGATTACTACTGGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGTAACGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACGGCATTCTCAACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACTTCTATCCCTACTATTTTTGTTGGTATTCTCGACAAAGACTTGAGTGACAAAACCTTACTCCAGTATCCTAAGCTCTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTTTATGTGCCATTATACATTTACAAGGAGAGTACCATTGATATTTGGAGCTTGGGAAGTTTGTGGACGATAGCAGTCGCTATCCTTGTGAACGTACACTTGGCGATGGACGTTCAACGTTGGGTATATATTACACATGCTGCAGTCTGGGGATCCATAGTCATAACATATGCTTGCATGGTGGTGTTGGATTCGATACCCGTTTTTCCTAACTACTGGACGATCTTTCATCTTGCCAAGTCCCCAACCTATTGGCTGACTATATTGCTCATAATAGTTGTAGCATTGCTTCCACGATATCTTTTTAAAGTTGTGAATCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAGAGAAGCCGAGGTGCTGAGGAAACGAAAGGGTCGTGAACAAATGGGCTCAAAGCGAGATCGAGATTCCAATTAA | 4173 | 41.72 | MTSGQPLLASSESPSVIEYRSPSRNRGSVGCLCRSASFTSSSYDDAQSDIVDVKENCTSPFEDNGWSSENCLRRSTSLSRKRQFYTVGSLFPQQFPFGYPTQDRRRLVSWGAMEMHNINDDPASFELTRVQEKLHKAQRSRHKSMQFEDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDEFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGLWLVRHKERLDTLPYYRKRYFTNGADDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISSSRFQCRSLNINEDLGQVRYIFSDKTGTLTENKMEFKRASVHGKNYGNNLSEAFPSMLYSIPGTENDFTATIIIILLSMFGLAHKYPVSEAANAIAKVLSPLDGQPLSCDVLPQCDLFATATLGRRRWKLKSEVAVDTELVKLLHKDLNGDEKIAAHEFFLTLAACNTVIPIHMDDKSIYANGELHEEDFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMLSILGTDSDREEFIKRTTQNHLCEYSMEGLRTLVVAARDLKDSEFELWQSRYEDASTSLTERAVKLRQTAALIECNLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIVINGNSENDCRRLLADAMEKYSIKSTQCGSQRPKLENCENECHDLPKTSSMSDFNDGKEDVTDKPLALIIDGNSLVYILEKELESEARILLLPLRTFTCRINNIILIFHSLLMIVEMIPILWQLFDLSTSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESTIDIWSLGSLWTIAVAILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAREAEVLRKRKGREQMGSKRDRDSN | 1390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14561706 | 14568196 | - | Lsi01G016190.1 | Lsi01g01619 | 654277 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01619 | 1390 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 548 | 554 | IPR018303 | - | |
Lsi01g01619 | 1390 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 152 | 1018 | - | - | |
Lsi01g01619 | 1390 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 1037 | 1388 | - | - | |
Lsi01g01619 | 1390 | Gene3D | - | 522 | 542 | - | - | |
Lsi01g01619 | 1390 | Gene3D | - | 873 | 1133 | IPR023214 | - | |
Lsi01g01619 | 1390 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 1064 | 1179 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g01619 | 1390 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 479 | 572 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g01619 | 1390 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Lsi01g01619 | 1390 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 174 | 1360 | IPR023298 | - | |
Lsi01g01619 | 1390 | CDD | P-type_ATPase_APLT_Dnf-like | 176 | 1253 | - | - | |
Lsi01g01619 | 1390 | SFLD | p-type atpase | 530 | 1144 | IPR044492 | - | |
Lsi01g01619 | 1390 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 1121 | 1361 | IPR032630 | - | |
Lsi01g01619 | 1390 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 1037 | 1388 | - | - | |
Lsi01g01619 | 1390 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 152 | 1018 | - | - | |
Lsi01g01619 | 1390 | SFLD | C1.7: P-type atpase like | 530 | 1144 | - | - | |
Lsi01g01619 | 1390 | Gene3D | - | 236 | 403 | - | - | |
Lsi01g01619 | 1390 | Gene3D | - | 718 | 856 | IPR023299 | GO:0000166 | |
Lsi01g01619 | 1390 | Gene3D | - | 556 | 572 | IPR023299 | GO:0000166 | |
Lsi01g01619 | 1390 | Gene3D | - | 543 | 555 | IPR023214 | - | |
Lsi01g01619 | 1390 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 552 | 889 | IPR023299 | GO:0000166 | |
Lsi01g01619 | 1390 | SUPERFAMILY | HAD-like | 533 | 1138 | IPR036412 | - | |
Lsi01g01619 | 1390 | SUPERFAMILY | Calcium ATPase, transduction domain A | 257 | 399 | IPR008250 | - | |
Lsi01g01619 | 1390 | Pfam | Phospholipid-translocating ATPase N-terminal | 160 | 225 | IPR032631 | - | |
Lsi01g01619 | 1390 | Pfam | E1-E2 ATPase | 258 | 504 | - | - | |
Lsi01g01619 | 1390 | Pfam | Cation transport ATPase (P-type) | 722 | 798 | - | - | |
Lsi01g01619 | 1390 | TIGRFAM | ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase | 174 | 1027 | IPR006539 | GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01619 | Lsi-Chr1:14561706 | Lsi08g00624 | Lsi-Chr8:14590144 | 0 | dispersed | |
Lsi01g01619 | Lsi-Chr1:14561706 | Lsi04g00308 | Lsi-Chr4:3125165 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01619 | K14802 | - | gmx:100812459 | 1840.85 |