Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01619 ATGACATCTGGTCAGCCCTTGCTGGCTTCATCAGAATCTCCATCAGTTATTGAATACAGATCCCCATCTCGAAATCGCGGATCCGTTGGCTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGAGTGACATTGTGGATGTGAAGGAAAACTGCACCAGCCCTTTTGAAGATAACGGTTGGAGTAGTGAGAATTGCCTCAGACGGTCCACTTCGCTTTCTAGGAAGAGGCAGTTTTATACTGTTGGCTCTCTGTTTCCTCAGCAGTTTCCTTTTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGATGCATAATATTAATGATGACCCTGCAAGCTTTGAACTTACTAGGGTCCAAGAGAAGTTGCATAAGGCGCAAAGAAGTCGTCATAAGAGTATGCAGTTTGAAGATAATTTACAACATGACGATAATCCAAGGTTGATATACATCAATGATCCAAGGAGGACTAATGACAAGTATGAGTTCACAGGAAATGAGATCACCACCAGCAAGTACACATTGATTACTTTCTTGCCAAAGAACCTTTTTATTCAGTTCCACCGCGTAGCCTATCTCTATTTTCTTGCTATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTTCCCCTTCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTACGAAGATTGGCGTAGACACAGATCTGATCGTAATGAGAACAATAGACAGGCTCTGGTGTTTCAATCTGATGAATTCCGATTGAAAGTGTGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCTGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCCAGTGGCCTTGCTTACATCCAAACGATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCTGCAGTAGCTGAGGGGTGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTTAACGGCCATAAATTTCCCCTCAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTGAAGAACACTGAATGGATAATTGGGGTGGTTGTCTATGCCGGACAAGAGACAAAAGCCATGCTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATTTTCCTCTTTATCATGTGTCTAGTAGTGGCCCTTGGAATGGGCTTATGGCTCGTTCGGCACAAGGAACGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACAAATGGGGCAGATGATGGGAAGAGGTACAGGTTTTATGGTATACCTATGGAGACATTTTTCTCCTTTTTGAGTTCTATTATAGTGTTTCAGATTATGATACCGATATCCCTTTATATTACAATGGAGATGGTGAGACTGGGCCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTTCCTCAAGGTTCCAGTGCAGATCATTGAATATCAATGAGGATCTTGGTCAAGTTCGCTACATATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTTAAAAGAGCAAGTGTGCACGGGAAGAATTACGGGAACAACTTGTCTGAGGCATTTCCATCAATGTTGTATTCCATCCCAGGTACGGAAAATGATTTCACTGCTACCATCATCATAATTTTGTTATCCATGTTTGGGTTAGCTCATAAATATCCCGTAAGCGAAGCTGCCAATGCAATTGCCAAGGTATTATCTCCATTAGATGGCCAGCCTTTGTCCTGTGATGTTCTACCTCAATGTGATCTTTTTGCAACAGCAACTCTAGGGAGGAGGAGGTGGAAACTTAAATCTGAAGTTGCTGTTGATACCGAACTTGTCAAATTATTGCACAAGGACCTAAACGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCCGCATGCAATACTGTAATTCCTATTCACATGGATGACAAATCTATTTATGCAAATGGTGAATTGCACGAGGAGGATTTTGAAACTATTGATTATCAGGGGGAATCCCCTGATGAGCAAGCACTAGTTGCTGCAGCCTCCGCTTATGGATATACCCTTTTTGAGCGCACGTCTGGGCATATTGTTATTGATGTCAATGGTGAGAACTTAAGGTTAGACGTTTTGGGTTTACATGAGTTTGATAGTGTTCGCAAAAGAATGTCTGTCGTCATCAGATTCCCTGACAACACTATAAAGGTGCTGGTAAAAGGTGCCGATACCTCGATGTTGAGTATTTTAGGCACCGACTCTGATAGAGAAGAATTTATCAAGCGTACTACTCAGAACCATTTGTGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGAAAGATTCTGAATTTGAGCTGTGGCAGAGCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCAGACAGCAGCCCTTATAGAATGCAATCTAAAGCTTTTGGGTGCAACTGCGATTGAGGACAAGCTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGGCAGGCGGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATCGGTCTCTCCTGCAAACTGCTGACTTCTGATATGCAGTCAATAGTTATCAATGGAAATTCCGAGAATGATTGCAGGCGACTTTTAGCTGATGCTATGGAAAAATATAGTATTAAATCAACACAGTGTGGAAGTCAAAGACCGAAGCTGGAGAATTGTGAGAATGAATGTCATGATTTACCAAAGACATCTAGCATGTCAGATTTTAATGATGGGAAAGAAGACGTGACTGATAAACCACTAGCTCTGATAATTGACGGGAACAGTTTGGTGTATATTTTGGAGAAGGAATTGGAGTCTGAGGCAAGAATCTTGTTGTTACCTTTGAGAACCTTTACATGCCGCATCAATAATATAATTTTAATTTTTCATAGCTTGTTAATGATTGTTGAAATGATTCCTATTTTATGGCAGCTTTTTGACCTTTCAACTTCATGCGATGTTGTGTTATGCTGTCGTGTTGCTCCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGAGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGTGTTGGTATATGTGGACAGGAAGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGGTTCTTAAAAAGATTACTACTGGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGTAACGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACGGCATTCTCAACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACTTCTATCCCTACTATTTTTGTTGGTATTCTCGACAAAGACTTGAGTGACAAAACCTTACTCCAGTATCCTAAGCTCTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTTTATGTGCCATTATACATTTACAAGGAGAGTACCATTGATATTTGGAGCTTGGGAAGTTTGTGGACGATAGCAGTCGCTATCCTTGTGAACGTACACTTGGCGATGGACGTTCAACGTTGGGTATATATTACACATGCTGCAGTCTGGGGATCCATAGTCATAACATATGCTTGCATGGTGGTGTTGGATTCGATACCCGTTTTTCCTAACTACTGGACGATCTTTCATCTTGCCAAGTCCCCAACCTATTGGCTGACTATATTGCTCATAATAGTTGTAGCATTGCTTCCACGATATCTTTTTAAAGTTGTGAATCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAGAGAAGCCGAGGTGCTGAGGAAACGAAAGGGTCGTGAACAAATGGGCTCAAAGCGAGATCGAGATTCCAATTAA 4173 41.72 MTSGQPLLASSESPSVIEYRSPSRNRGSVGCLCRSASFTSSSYDDAQSDIVDVKENCTSPFEDNGWSSENCLRRSTSLSRKRQFYTVGSLFPQQFPFGYPTQDRRRLVSWGAMEMHNINDDPASFELTRVQEKLHKAQRSRHKSMQFEDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDEFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGLWLVRHKERLDTLPYYRKRYFTNGADDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISSSRFQCRSLNINEDLGQVRYIFSDKTGTLTENKMEFKRASVHGKNYGNNLSEAFPSMLYSIPGTENDFTATIIIILLSMFGLAHKYPVSEAANAIAKVLSPLDGQPLSCDVLPQCDLFATATLGRRRWKLKSEVAVDTELVKLLHKDLNGDEKIAAHEFFLTLAACNTVIPIHMDDKSIYANGELHEEDFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMLSILGTDSDREEFIKRTTQNHLCEYSMEGLRTLVVAARDLKDSEFELWQSRYEDASTSLTERAVKLRQTAALIECNLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIVINGNSENDCRRLLADAMEKYSIKSTQCGSQRPKLENCENECHDLPKTSSMSDFNDGKEDVTDKPLALIIDGNSLVYILEKELESEARILLLPLRTFTCRINNIILIFHSLLMIVEMIPILWQLFDLSTSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESTIDIWSLGSLWTIAVAILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAREAEVLRKRKGREQMGSKRDRDSN 1390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14561706 14568196 - Lsi01G016190.1 Lsi01g01619 654277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01619 1390 ProSitePatterns E1-E2 ATPases phosphorylation site. 548 554 IPR018303 -
Lsi01g01619 1390 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 152 1018 - -
Lsi01g01619 1390 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1037 1388 - -
Lsi01g01619 1390 Gene3D - 522 542 - -
Lsi01g01619 1390 Gene3D - 873 1133 IPR023214 -
Lsi01g01619 1390 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 1064 1179 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g01619 1390 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 479 572 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g01619 1390 MobiDBLite consensus disorder prediction 1 28 - -
Lsi01g01619 1390 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1360 IPR023298 -
Lsi01g01619 1390 CDD P-type_ATPase_APLT_Dnf-like 176 1253 - -
Lsi01g01619 1390 SFLD p-type atpase 530 1144 IPR044492 -
Lsi01g01619 1390 Pfam Phospholipid-translocating P-type ATPase C-terminal 1121 1361 IPR032630 -
Lsi01g01619 1390 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1037 1388 - -
Lsi01g01619 1390 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 152 1018 - -
Lsi01g01619 1390 SFLD C1.7: P-type atpase like 530 1144 - -
Lsi01g01619 1390 Gene3D - 236 403 - -
Lsi01g01619 1390 Gene3D - 718 856 IPR023299 GO:0000166
Lsi01g01619 1390 Gene3D - 556 572 IPR023299 GO:0000166
Lsi01g01619 1390 Gene3D - 543 555 IPR023214 -
Lsi01g01619 1390 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 552 889 IPR023299 GO:0000166
Lsi01g01619 1390 SUPERFAMILY HAD-like 533 1138 IPR036412 -
Lsi01g01619 1390 SUPERFAMILY Calcium ATPase, transduction domain A 257 399 IPR008250 -
Lsi01g01619 1390 Pfam Phospholipid-translocating ATPase N-terminal 160 225 IPR032631 -
Lsi01g01619 1390 Pfam E1-E2 ATPase 258 504 - -
Lsi01g01619 1390 Pfam Cation transport ATPase (P-type) 722 798 - -
Lsi01g01619 1390 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 174 1027 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01619 Lsi-Chr1:14561706 Lsi08g00624 Lsi-Chr8:14590144 0 dispersed
Lsi01g01619 Lsi-Chr1:14561706 Lsi04g00308 Lsi-Chr4:3125165 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01619 K14802 - gmx:100812459 1840.85