Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01624 ATGAAGGAAATTCATAAATCCCGTCTTGCATTTGCATTTGCATCTATCTCTGTGTTCCTTTGCTTGTTCGTCGATGTCCATGTGGTTTTAGCAGAAAATTACATCCCTAGGGATTTTATCCTCCTCGATTGTGGAGGGCCTCCAACTGCTAACGACATCGATGGCCGGAAATGGTATACCGATGACAATTCTAAGTTTGTTCCCGCGACAGGGAATAGCGTCGGATCGAAAGCCGCTACTCAGGATCCTTCAGTTCCTGATATCCCTTTCATGACGGCTAGGGTTTTTAGCTCTAATTTCACCTACAGCTTTCCTGTGGCTCCTAGTCGTTTATTCGTTCGTCTCTACTTTTACCCTTCTTCTTATGGTGGACTTAATGCATCTGATGCTCTTTTCTCTGTTTCCACTCAATCCTATACTCTTCTTAAGAACTTCAGCGCTTCACAAACTGCTGAGGCTTTGAATTATGCGTATATCATTAAGGAATACTCTATCCATGTTGAAGGTGATAGATTGAACTTGACTTTCATTCCATCCTCCAGTCATCCAAAGGCTTATGCATTTGTAAATGGGATTGAGATTGTATCTATGGCTGATATTTACAGTGATACTTCTGGGAGTACTCTGATTGTTGGCCCATCTACTCCATTTACTGTGGACAATGCCACTGCGCTTGAGAATGTTTATCGGTTGAATGTCGGGGGGAATGATATTTCGCCTTCTGGTGATACAGGGATGTATAGGTCTTGGTTTGATGACACTCCATACTTGTATGGTGCAGCGCAGGGAGTGACGGTGAGTACTGATCAGAACACAGCGCTTAATTATCCGCCAAGCATTCCTACTTATGTTGCGCCGGAAAATGTCTACTCCACTGCTAGATCAATGGGACCTGATAACAATGTCAATCTGAATTATAACTTGACATGGATTTTCCCTGTTGACTCTGGGTTCTTTTACCTTGTTAGGCTCCATTTTTGTGAGGTTGCTGCAAATATCACAAAAGTTAACCAAAGAGTGTTCGACATTTTCCTCTTTAATCAAACTGCTATGAATGGTGCTGACGTGATTGCCTGGGCTGGAAGTAATGATACTCCTATGTACAAAGATTATGTGGTTTTCGTTCCTGCTAATGGAAGTCCACAACAGGACTTATGGCTCGAACTGCATCCAGACAAGTCCATGATCCCCAATTACTATGATGCAATCTTGAACGGAGTGGAGATATTCAAAATTAATGACTCGAACGCTAATCTTGCAGGGCCAAATCCTCTTCCTGCTCCAAAACAGGATATTATTGATCCATCATTAGCTAAGCCAGCATCTTCTCATGGTAAATCGAAGAATAAGGCAGGGGTGATTGCTGGAGTTGTGTGTGGAGCAGTTGTTTTAGCTCTGATCATTGGTTTCTTTGTTGTTGCTAAACGTCGCCGTGGGCATGGGAAAGATTCTAGCACTGTTGAAGGACCGTCAGGATGGCTACCTCTTTCCCTCTATGGAAATTCCCATTCAGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACATGCTCCCTGCCTTCCAACCTTTGCCGCCACTTCTCATTTTCTGAGATCAAGGCTGCCACAAGGGACTTTGATGAATCTTTACTACTTGGAGTTGGTGGTTTTGGCAAAGTTTACAAGGGAGAAATTGATGGTGGGACTACGAAAGTTGCCATCAAGCGTGGGAACCCTCTCTCTGAGCAAGGTGTGCATGAATTTCAAACTGAGATTGAAATGCTCTCTAAGCTTCGCCATCGCCACCTTGTTTCATTGATTGGCTACTGTGAAGAGAACTGTGAAATGATCCTGGTTTATGATTACATGGCTCATGGAACACTGCGAGAACATTTATACAAGACTCACAAGCCACCATTGTCTTGGAGGCAAAGGCTGGAGATATGCATTGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAGTATACAATTATTCATCGAGATGTGAAGACAACCAACATCCTTTTGGACGAAAAGTGGGTGGCAAAAGTATCCGATTTCGGGTTGTCGAAAACTGGTCCTACTTTGGATCACACACATGTCAGCACGGTTGTGAAAGGTAGTTTCGGGTACTTGGATCCTGAATACTTTAGACGGCAGCAATTGACCGACAAATCAGATGTTTACTCCTTTGGAGTTGTTCTCTTTGAAGTCCTATGTGCTCGGCCAGCCCTGAACCCAACACTCCCCAAGGAGCAAGTGAGTTTAGCCGAATGGGCCGCACACTGCTACAACAAAGGCATTTTAGATCAGATAATCGACACATTCCTAAAGGGGAAGATCGCATCGGAGTGTCTCAAGAAGTTCGCTGAGACAGCAATGAAATGTGTATCTGATCAGGGCATCGACAGGCCATCAATGGGCGACGTTCTCTGGAATCTAGAGTTTGCATTGCAGCTGCAGGAGAGCGCAGAAGAGAGTGGCAAAGTAGGCAGTGGGATAGAAATGGAAGAAGGTCAGCTCGACGTAGTTTACAAAGGGAAGAAGGATCCAGATGCTTCCCCCGGCATCGATGGAAACATAACCGACTCAAGAAGCACTGGAATCAGTATGAGCATTGGAAGCCGGAGTCTTGCCAGTGAAGATTCGGACGGGTTGACGCCGAGTGCCGTCTTCTCACAGATCATGAACCCAAAAGGTCGTTAA 2697 44.83 MKEIHKSRLAFAFASISVFLCLFVDVHVVLAENYIPRDFILLDCGGPPTANDIDGRKWYTDDNSKFVPATGNSVGSKAATQDPSVPDIPFMTARVFSSNFTYSFPVAPSRLFVRLYFYPSSYGGLNASDALFSVSTQSYTLLKNFSASQTAEALNYAYIIKEYSIHVEGDRLNLTFIPSSSHPKAYAFVNGIEIVSMADIYSDTSGSTLIVGPSTPFTVDNATALENVYRLNVGGNDISPSGDTGMYRSWFDDTPYLYGAAQGVTVSTDQNTALNYPPSIPTYVAPENVYSTARSMGPDNNVNLNYNLTWIFPVDSGFFYLVRLHFCEVAANITKVNQRVFDIFLFNQTAMNGADVIAWAGSNDTPMYKDYVVFVPANGSPQQDLWLELHPDKSMIPNYYDAILNGVEIFKINDSNANLAGPNPLPAPKQDIIDPSLAKPASSHGKSKNKAGVIAGVVCGAVVLALIIGFFVVAKRRRGHGKDSSTVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTCSLPSNLCRHFSFSEIKAATRDFDESLLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTHKPPLSWRQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYNKGILDQIIDTFLKGKIASECLKKFAETAMKCVSDQGIDRPSMGDVLWNLEFALQLQESAEESGKVGSGIEMEEGQLDVVYKGKKDPDASPGIDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14619076 14621772 + Lsi01G016240.1 Lsi01g01624 654282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01624 898 ProSiteProfiles Protein kinase domain profile. 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01624 898 PANTHER OS07G0166700 PROTEIN 24 864 IPR045272 GO:0004714|GO:0006468
Lsi01g01624 898 Gene3D - 224 413 - -
Lsi01g01624 898 Gene3D - 39 198 - -
Lsi01g01624 898 Gene3D Phosphorylase Kinase; domain 1 525 616 - -
Lsi01g01624 898 Pfam Protein tyrosine and serine/threonine kinase 546 808 IPR001245 GO:0004672|GO:0006468
Lsi01g01624 898 Gene3D Transferase(Phosphotransferase) domain 1 617 832 - -
Lsi01g01624 898 SMART serkin_6 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01624 898 SUPERFAMILY Protein kinase-like (PK-like) 515 813 IPR011009 -
Lsi01g01624 898 ProSitePatterns Protein kinases ATP-binding region signature. 546 569 IPR017441 GO:0005524
Lsi01g01624 898 Pfam Malectin-like domain 42 412 IPR024788 -
Lsi01g01624 898 CDD STKc_IRAK 546 812 - -
Lsi01g01624 898 PANTHER - 24 864 - -
Lsi01g01624 898 MobiDBLite consensus disorder prediction 856 891 - -
Lsi01g01624 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Lsi01g01624 898 MobiDBLite consensus disorder prediction 846 898 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01624 Lsi-Chr1:14619076 Lsi11g00433 Lsi-Chr11:4550758 0 dispersed
Lsi07g00949 Lsi-Chr7:11890233 Lsi01g01624 Lsi-Chr1:14619076 9.99E-172 dispersed
Lsi01g01624 Lsi-Chr1:14619076 Lsi01g01631 Lsi-Chr1:14723397 3.91E-66 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83298 PF12819 Malectin_like 4.10E-40 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01624 - - csv:101211171 1680.61