Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01628 ATGAGGCTACAATCCCTTTTTGCAGCAGCATCTTTACTCTTACTCATATATTTTTTCTCCTTCATTGCGGCTGATCTAAACTCAGACCAGCAAGCTCTTCTGGAGTTTATTTCGACAGTTCCCCATGGTCGGAAAATTAACTGGGATCCTTCTACCCCGGTATGCACTACTTGGGTTGGCGTCACTTGCACTTCAGACCTCTCTAATGTGCTTGCTCTCAGGCTGCCTGCTGTTGGACTGTATGGTCCGATCCCGGCCAATACACTTGGAAAGTTAGAGGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAACCTTCCATCAGATGTGCTATCTCTTCCCTCCCTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTAAAATACCTTCTTCCCTGTCTCCTAGCTTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACCGGAAACATTCCGAAATCGATACAAAATTTAACGCACCTCACTGGCCTCAATGTTCAAAACAACTCCCTGACCGGATCCATTCCTGATATAGGTCACCTAAAGCTTAAGCAATTGAACTTGAGCTACAACCAGCTTAGCGGTCCCATTCCTGCTTCACTGCAATCATTTCCTACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCCCCCCTGAAAAATTGCTCAGTTGGTGCCCCCTTACCTTCTCCGTCTCCTGCTTCGTTGCCCCCACCAAAGAAAAAGAGTGAAAAGAAAATAAATATTGGAGCTATTGTTGCCATTGCCTTAGGTGGTGCTGCCGTGCTCTTCCTCCTCATGTTATTGATTGTTGTCTGCTGTATGAAGAAAAAAGATGGTGATGGTAGTGCTGCTGCTGTGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTTGGAAGTGGGGTACAAGAGCCCGAGAAAAACAGGCTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGACTTGTTGAGGGCCTCTGCTGAAGTGCTCGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAGGAAGGAGTAACAGTGGTAGTAAAGAGGTTGAAAGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTTCCTCTCCGTGCCTATTACTATTCAAAAGATGAGAAGCTTTTGGTTTACGACTATGCCGATGCTGGAAGCTTTTCGGCATTACTCCGTGGAAGCCGAGAAGGCGGACGAGCGCCACCTGACTGGGAAACAAGATTGAAGGTTTCACTGGGGTGTGCCAAAGGCCTTGCACATATCCATTCAGCAAGTGGGGGAAAATTCATTCATGGCAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGTATTTCAGATTTTGGCCTGACTCCTTTGATGAATTCCCCTGCCATTCCCTCTAGAAGTGTAGGTTATCGTGCTCCAGAGGTGATCGAGACTCGAAAATCAACTCAAAAGTCAGACGTTTACAGTTTTGGAGTCGTTTTGCTAGAGATGTTGACTGGGAAAGCACCATCCCAATCACCAGGCCGTGACGATGTTATGGACCTTCCGAGATGGGTCCAGTCTGTGGTAAGAGAGGAATGGACATCTGAGGTGTTTGATGTAGAGCTAATGAAGTATCAGAACATTGAAGAAGAGCTTGTTCAAATGCTCCAAATAGCAATGGCTTGCGTGTCTCGAGTTCCGGATATGAGACCAACAATGGAAGAAGTTGTTAGGATGATTGAGGATATCCGACAATTAGACTCAGGAACTCGACCATCATCAGAAGATAACAAAGCCGGGGACGGGGACGGGGACGATGACTTGAATCCTCAGACCTTGTAA 1911 45.47 MRLQSLFAAASLLLLIYFFSFIAADLNSDQQALLEFISTVPHGRKINWDPSTPVCTTWVGVTCTSDLSNVLALRLPAVGLYGPIPANTLGKLEALRTLSLRSNNLNGNLPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPSFTFLDLSFNSLTGNIPKSIQNLTHLTGLNVQNNSLTGSIPDIGHLKLKQLNLSYNQLSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPSPASLPPPKKKSEKKINIGAIVAIALGGAAVLFLLMLLIVVCCMKKKDGDGSAAAVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYADAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEDIRQLDSGTRPSSEDNKAGDGDGDDDLNPQTL 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14646194 14650760 - Lsi01G016280.1 Lsi01g01628 654286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01628 636 PANTHER OS05G0480400 PROTEIN 9 621 - -
Lsi01g01628 636 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Lsi01g01628 636 MobiDBLite consensus disorder prediction 606 636 - -
Lsi01g01628 636 Gene3D Ribonuclease Inhibitor 187 228 IPR032675 -
Lsi01g01628 636 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Lsi01g01628 636 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524
Lsi01g01628 636 Gene3D Phosphorylase Kinase; domain 1 296 410 - -
Lsi01g01628 636 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Lsi01g01628 636 Pfam Leucine Rich Repeat 143 162 IPR001611 GO:0005515
Lsi01g01628 636 MobiDBLite consensus disorder prediction 286 310 - -
Lsi01g01628 636 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01628 636 PANTHER OS05G0588300 PROTEIN 9 621 - -
Lsi01g01628 636 MobiDBLite consensus disorder prediction 606 628 - -
Lsi01g01628 636 Gene3D Transferase(Phosphotransferase) domain 1 412 625 - -
Lsi01g01628 636 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01628 636 SUPERFAMILY Protein kinase-like (PK-like) 339 603 IPR011009 -
Lsi01g01628 636 SUPERFAMILY L domain-like 39 225 - -
Lsi01g01628 636 CDD STKc_IRAK 341 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01628 Lsi-Chr1:14646194 Lsi10g01489 Lsi-Chr10:19061529 0 dispersed
Lsi02g01848 Lsi-Chr2:24240961 Lsi01g01628 Lsi-Chr1:14646194 1.65E-69 dispersed
Lsi04g00224 Lsi-Chr4:2329328 Lsi01g01628 Lsi-Chr1:14646194 1.27E-93 dispersed
Lsi01g01628 Lsi-Chr1:14646194 Lsi11g00286 Lsi-Chr11:2954323 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83299 PF00069 Pkinase 2.60E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01628 - - csv:101210437 1101.66