Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01631 ATGACGTCGATGTGGAGAGATTGTGCCTGCGTTTTTCTGCTGTTGTGTTGTTGCTCCATTCTTCTTGCTGGTGCTGCTACCACAGAGCCATCTGATGTTCTGTTACAATTTTTTGTTCTCCTGACCATTACTTGGCCATTTAAAGCATTGCTAGCGGTAAAGAGGAGTCTAATTGATCCTATGGACCAGCTTAACAGTTGGAGTAATGGAGATCCTTGCATAGATAATTGGATTGGAGTAGTATGCAGCAATTCCGATGGAACTGTCGGGAACTTACGTGTCAAAGAACTCCAGCTATTGAATATGAACCTATCTGGAAATTTAGCCCCTGAGATCAGCCAATTGTCCGTGCTTGAGAAGTTAGATTTCATGTGGAATAACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATTATATCGCTGAAACTTTTACTCCTAAATGGAAATAAACTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTTACAAATCTCAACCGGTTCCAAATAGATGAGAATCAAATTTCAGGGCCTATCCCAAAATCATATGCCAACTTGATCTGTGTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCAAAATTACCCCAGCTTATTCACTTGCTTTTGGATAACAATAACTTGTCGGGTTCTCTGCCACCAGAATTTTCGACCTTGCCAATGCTATACATTCTGCAACTTGATAACAACAACTTCGTAGGTGAAATTCCGGCATCTTATGAAAATTTTCCTAAATTAGTGAAATTAAGTCTGAGGAATTGCGGCTTGGAGGGACCGATTCCTAATTTTAGCAAGATAGCAAACCTCAGTTACTTAGATCTTAGCTGGAACCATTTTAGTGGACCCATACCGCCTTATAACCTCTCTTCTAGGATGACAACAATAATTTTGTCGAACAATCAGCTGAATGGATCTATACCCAGAAGTTTCTCCAATCTTCCTGTCCTCCAGAAACTGTCACTTGAGAATAACTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGAAAATGTCCTTCGAATCAAGTGCTCGACTTACACTCGATCTTCGGAACAATTCATTCTCTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGCTGGAATTTATGCGTTGGCCACATTAAACTGTAGGCTTGGAGGAAATCCAATCTGCCAAAATTTGGGCGGCCAAAACTCTGACCAGTTCTGTACGTCAAATATTGTAGGGGATGGGCTTCATAGAAGCTCAAGGAATTCCAGTGAAACATGTCCAGTTAGCAGTTGTCCAACGGACAGTTTCTTTGAATTAGTGCCAGACACTCCTGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAGAGTCCAAGTTTTTCCTACTTTCCTCCATACATACATTTATTTGAAGCGTATCTGACAAAGGAACTCAGTTTGGAGGATAACCAATTGTTAATCGATTCATACGATTGGGAAGGAGCTCGCCTGAGGATGTATCTGAAGATTTTTCCATCATTTGATAGTGGCACTCATAAATTGGATATAAGTGAGATATTTCTAATTACAGAACAATTTATGGCATGGAATTTTACCCGTAATGACTTTTTTGGCCCATACGAGCTTCTCAACTTCACACTCCCTGACCGTTTTCAGACTGTCATTTTCCAGACAGAGAAGATGGGTATTAGTACGGGCATCCTGGCTGCCATTATAGTTGGATCTGTTTTTTGTCTTCTTTTGATCGTAGCAGTAACCGTACTTCTATTCACTAGGCATTCTAGATACCATCACAATTTGTCAAGGAAAAATCTCTCTTCAACGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAGGAAATGCAATCGGCTACTGGAAATTTCAACCGCTCAACTCAAGTTGGCCAAGGAGGTTATGGAAAAGTCTATAAAGGCATACTATCAGATAATTCAGTTGTAGCCATCAAGCGTGCAGAAGAAGGATCTTTACAAGGCCAAAAAGAATTTTTGACAGAGATAAAACTCTTATCACGATTGCATCACCGTAACTTAGTATCTCTAATCGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGCCGAATGGAACTTTGCGGGACTGGCTTTCTAGTTTTGAATTTTCTGGTATTGGCCTCAGCAAATATTTTATTTGTTCTGAACCCTCATCTATGTCTGTGGCCCCTGTTATATGCTTAATTACAAATGCTCTTGGGACTAGAAATTATCCTGACAAAAGTAACACTACAGTAAATCTGAATTTTCGTATGAGATTACAAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCATACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTCCTCGATGCCAAGTTCACGGCCAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCTGATCTGGATTGCGAGGGGGCTGTTCCCGGACATATATCTACTGTTGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTTTTAACCCATAAACTGACAGACAAAAGTGATGTCTATAGCCTAGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCTATTTCGCACGGCAAAAACATCGTCCGTGAGTCAACCAACTCTTCTATAGGAAATATCTGTGGGATTCAGTTGGTAAAATTGGCACATCAAATGGGAACGATTCTTTCAATCGTAGACACAACGTTGGGTTCTTTCGCATCCGAGTGTTTAGAGAGGTTTGTTGCTTTAGCCCTCAGTTGTTGCCATGACAATCCAGAAGAGCGACCGTCGATGCTAGTTGTGGTGAGGGAGCTGGAGAACATACTGAACATGATGCCTGACGATAGCGGTACCTTGTATTCAGACTTGTCCACAAGATCAAGTGCAGGACTTCCATCCTCACCGACATCAACGACCTGCAACACTCGAGACCAGTTTGCATCGGGAAGCATTTCGGGGAGCGATCTCATTAGTGGCGTCATGCCAACCATCAGACCTCGCTGA 3093 41.77 MTSMWRDCACVFLLLCCCSILLAGAATTEPSDVLLQFFVLLTITWPFKALLAVKRSLIDPMDQLNSWSNGDPCIDNWIGVVCSNSDGTVGNLRVKELQLLNMNLSGNLAPEISQLSVLEKLDFMWNNLTGSIPKEIGSIISLKLLLLNGNKLSGSLPDELGNLTNLNRFQIDENQISGPIPKSYANLICVKHLHFNNNTLSGEIPSELSKLPQLIHLLLDNNNLSGSLPPEFSTLPMLYILQLDNNNFVGEIPASYENFPKLVKLSLRNCGLEGPIPNFSKIANLSYLDLSWNHFSGPIPPYNLSSRMTTIILSNNQLNGSIPRSFSNLPVLQKLSLENNFLNGSVPSALWEKMSFESSARLTLDLRNNSFSDISGSTNPPANAGIYALATLNCRLGGNPICQNLGGQNSDQFCTSNIVGDGLHRSSRNSSETCPVSSCPTDSFFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYIHLFEAYLTKELSLEDNQLLIDSYDWEGARLRMYLKIFPSFDSGTHKLDISEIFLITEQFMAWNFTRNDFFGPYELLNFTLPDRFQTVIFQTEKMGISTGILAAIIVGSVFCLLLIVAVTVLLFTRHSRYHHNLSRKNLSSTIGLKIDGVKAFSFKEMQSATGNFNRSTQVGQGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSSFEFSGIGLSKYFICSEPSSMSVAPVICLITNALGTRNYPDKSNTTVNLNFRMRLQIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLDCEGAVPGHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVRESTNSSIGNICGIQLVKLAHQMGTILSIVDTTLGSFASECLERFVALALSCCHDNPEERPSMLVVVRELENILNMMPDDSGTLYSDLSTRSSAGLPSSPTSTTCNTRDQFASGSISGSDLISGVMPTIRPR 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14723397 14737512 + Lsi01G016310.1 Lsi01g01631 654289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01631 1030 Pfam Protein tyrosine and serine/threonine kinase 646 968 IPR001245 GO:0004672|GO:0006468
Lsi01g01631 1030 CDD STKc_IRAK 649 971 - -
Lsi01g01631 1030 SUPERFAMILY Protein kinase-like (PK-like) 628 998 IPR011009 -
Lsi01g01631 1030 Pfam Leucine rich repeat N-terminal domain 48 83 IPR013210 -
Lsi01g01631 1030 ProSitePatterns Protein kinases ATP-binding region signature. 649 671 IPR017441 GO:0005524
Lsi01g01631 1030 SMART serkin_6 643 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01631 1030 MobiDBLite consensus disorder prediction 985 1007 - -
Lsi01g01631 1030 Gene3D Ribonuclease Inhibitor 305 383 IPR032675 -
Lsi01g01631 1030 Gene3D Phosphorylase Kinase; domain 1 614 718 - -
Lsi01g01631 1030 SUPERFAMILY L domain-like 62 380 - -
Lsi01g01631 1030 ProSiteProfiles Protein kinase domain profile. 643 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01631 1030 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 25 1002 - -
Lsi01g01631 1030 Gene3D Transferase(Phosphotransferase) domain 1 766 984 - -
Lsi01g01631 1030 Gene3D Ribonuclease Inhibitor 47 304 IPR032675 -
Lsi01g01631 1030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 25 1002 - -
Lsi01g01631 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01631 Lsi-Chr1:14723397 Lsi02g01199 Lsi-Chr2:15311779 0 dispersed
Lsi01g01624 Lsi-Chr1:14619076 Lsi01g01631 Lsi-Chr1:14723397 3.91E-66 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83300 PF07714 PK_Tyr_Ser-Thr 1.90E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01631 - - bhj:120073192 1691.4